Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J06
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 416 LNKAGKFPGLLSHQE 460
           LNK GK P L++H+E
Sbjct: 573 LNKIGKNPNLVAHRE 587



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 64  ERITRYFRHFYE 29
           +RIT YF H Y+
Sbjct: 410 QRITEYFEHRYQ 421


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 416 LNKAGKFPGLLSHQE 460
           LNK GK P L++H+E
Sbjct: 541 LNKIGKNPNLVAHRE 555



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 64  ERITRYFRHFYE 29
           +RIT YF H Y+
Sbjct: 378 QRITEYFEHRYQ 389


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 581 HFGQVHLESCRRDRRPQTGTTPSSFGI 501
           H GQ+HL       + Q G  P  +G+
Sbjct: 908 HQGQIHLTVAVVQYKTQDGFGPIHYGV 934


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,147
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)