Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J05
(367 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 54 3e-08
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 54 3e-08
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 52 1e-07
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 52 1e-07
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 47 5e-06
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 46 1e-05
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 46 1e-05
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 46 1e-05
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 45 2e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 44 3e-05
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 44 3e-05
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 44 3e-05
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 43 8e-05
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 41 2e-04
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 41 2e-04
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 39 0.001
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 39 0.001
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 39 0.001
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 38 0.002
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 37 0.005
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 37 0.005
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 36 0.007
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 36 0.007
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.012
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.016
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.016
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.016
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 35 0.016
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 35 0.016
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 35 0.016
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.016
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 35 0.020
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 34 0.036
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 34 0.036
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 33 0.083
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 33 0.083
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.11
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 32 0.11
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 32 0.11
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 32 0.11
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 32 0.14
Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical pr... 31 0.25
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 31 0.25
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.25
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.25
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 30 0.44
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 30 0.44
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 30 0.44
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p... 30 0.58
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 30 0.58
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 0.77
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 29 1.0
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 29 1.0
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 29 1.0
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 1.3
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 29 1.3
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 28 1.8
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 28 1.8
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 28 1.8
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 1.8
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 2.4
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 26 7.2
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 26 7.2
L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical pr... 26 7.2
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas... 26 7.2
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ... 26 7.2
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 26 7.2
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 26 7.2
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 26 7.2
AC006625-4|AAK68276.1| 446|Caenorhabditis elegans Hypothetical ... 26 7.2
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical p... 26 9.5
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 26 9.5
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 26 9.5
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 54.0 bits (124), Expect = 3e-08
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +1
Query: 112 TDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESIT 291
TDN++NGN+ ++N G ++D+K+FVGG+S E ++++L HF+ YGE+
Sbjct: 4 TDNKINGNASE---TIKENGHSTKG-NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQ 59
Query: 292 VKTDPNTG 315
VK D G
Sbjct: 60 VKYDRTNG 67
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
+++K+FVGGL + S+++LR HF +G+++ I D T
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQT 147
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 54.0 bits (124), Expect = 3e-08
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +1
Query: 112 TDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESIT 291
TDN++NGN+ ++N G ++D+K+FVGG+S E ++++L HF+ YGE+
Sbjct: 4 TDNKINGNASE---TIKENGHSTKG-NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQ 59
Query: 292 VKTDPNTG 315
VK D G
Sbjct: 60 VKYDRTNG 67
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
+++K+FVGGL + S+++LR HF +G+++ I D T
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQT 147
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 52.0 bits (119), Expect = 1e-07
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +1
Query: 163 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
D+ + G D K+F+GGLSW+T+ + LRD+F +GE+ V DP T
Sbjct: 33 DSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPAT 82
Score = 33.5 bits (73), Expect = 0.047
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = +1
Query: 94 FAQDITTDNQLNGNSEHGGGDGQDNSAEAPGRDD------DRKLFVGGLSWETSDKELRD 255
F + D LN G D P R +K+F+GGLS ++ ++++
Sbjct: 93 FVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQ 152
Query: 256 HFSAYGEIESITVKTDPNT 312
+F YG++E + D T
Sbjct: 153 YFETYGKVEDAMLMFDKAT 171
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 52.0 bits (119), Expect = 1e-07
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +1
Query: 163 DNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
D+ + G D K+F+GGLSW+T+ + LRD+F +GE+ V DP T
Sbjct: 33 DSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPAT 82
Score = 33.5 bits (73), Expect = 0.047
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = +1
Query: 94 FAQDITTDNQLNGNSEHGGGDGQDNSAEAPGRDD------DRKLFVGGLSWETSDKELRD 255
F + D LN G D P R +K+F+GGLS ++ ++++
Sbjct: 93 FVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQ 152
Query: 256 HFSAYGEIESITVKTDPNT 312
+F YG++E + D T
Sbjct: 153 YFETYGKVEDAMLMFDKAT 171
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 46.8 bits (106), Expect = 5e-06
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
K+FVGGL + TSDK L ++F +G+IE V TD NT
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNT 72
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 45.6 bits (103), Expect = 1e-05
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Frame = +1
Query: 199 RKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT------GSVTRVCLHSFQSA 354
RKLF+GGLS +T+D++L ++FS +G + V DPNT G VT + S +SA
Sbjct: 49 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESA 106
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 45.6 bits (103), Expect = 1e-05
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Frame = +1
Query: 199 RKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT------GSVTRVCLHSFQSA 354
RKLF+GGLS +T+D++L ++FS +G + V DPNT G VT + S +SA
Sbjct: 69 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESA 126
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 45.6 bits (103), Expect = 1e-05
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Frame = +1
Query: 199 RKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT------GSVTRVCLHSFQSA 354
RKLF+GGLS +T+D++L ++FS +G + V DPNT G VT + S +SA
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESA 127
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +1
Query: 166 NSAEAPGRDDD--RKLFVGGLSWETSDKELRDHFSAYGEIESITVKTD 303
N AE P +D R LFVG +++ETS+ +LR F AYG+I+ +T+ D
Sbjct: 91 NPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHD 138
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +1
Query: 136 SEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
+E+G GD S E ++ RK+FVGGL+ T+D +R+ +S +GEI I V DP T
Sbjct: 8 AENGSGDA---SLEP---ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTT 60
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +1
Query: 136 SEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
+E+G GD S E ++ RK+FVGGL+ T+D +R+ +S +GEI I V DP T
Sbjct: 8 AENGSGDA---SLEP---ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTT 60
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +1
Query: 136 SEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
+E+G GD S E ++ RK+FVGGL+ T+D +R+ +S +GEI I V DP T
Sbjct: 8 AENGSGDA---SLEP---ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTT 60
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 42.7 bits (96), Expect = 8e-05
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 169 SAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSFQ 348
+AE + D R ++VG + W+++ E+ +HF+ G++ +T+ D TG FQ
Sbjct: 36 TAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQ 95
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 154 DGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITV 294
D A + DD+KLF+G LS + S+ E+R F+ +GE++ +TV
Sbjct: 109 DTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTV 155
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 154 DGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITV 294
D A + DD+KLF+G LS + S+ E+R F+ +GE++ +TV
Sbjct: 109 DTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTV 155
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 39.1 bits (87), Expect = 0.001
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 115 DNQLNGNSEHG--GGDGQDNSAEAPGRDDD---RKLFVGGLSWETSDKELRDHFSAYGEI 279
D++ G S G G ++ S +DDD R LFVG + + ++E+R F +G++
Sbjct: 136 DSKREGGSGSGNRGRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKV 195
Query: 280 ESITVKTDPNT 312
E + +KT NT
Sbjct: 196 EEVDIKTPINT 206
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +1
Query: 199 RKLFVGGL-SWETSDKE-LRDHFSAYGEIESI 288
R+LFVGGL SW DKE L+ F +G +E+I
Sbjct: 251 RRLFVGGLGSW--CDKEILQKAFGEFGFVENI 280
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 39.1 bits (87), Expect = 0.001
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 115 DNQLNGNSEHG--GGDGQDNSAEAPGRDDD---RKLFVGGLSWETSDKELRDHFSAYGEI 279
D++ G S G G ++ S +DDD R LFVG + + ++E+R F +G++
Sbjct: 136 DSKREGGSGSGNRGRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKV 195
Query: 280 ESITVKTDPNT 312
E + +KT NT
Sbjct: 196 EEVDIKTPINT 206
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +1
Query: 199 RKLFVGGL-SWETSDKE-LRDHFSAYGEIESI 288
R+LFVGGL SW DKE L+ F +G +E+I
Sbjct: 251 RRLFVGGLGSW--CDKEILQKAFGEFGFVENI 280
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 39.1 bits (87), Expect = 0.001
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 115 DNQLNGNSEHG--GGDGQDNSAEAPGRDDD---RKLFVGGLSWETSDKELRDHFSAYGEI 279
D++ G S G G ++ S +DDD R LFVG + + ++E+R F +G++
Sbjct: 113 DSKREGGSGSGNRGRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKV 172
Query: 280 ESITVKTDPNT 312
E + +KT NT
Sbjct: 173 EEVDIKTPINT 183
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +1
Query: 199 RKLFVGGL-SWETSDKE-LRDHFSAYGEIESI 288
R+LFVGGL SW DKE L+ F +G +E+I
Sbjct: 228 RRLFVGGLGSW--CDKEILQKAFGEFGFVENI 257
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITV 294
D+ ++VG +S +T+D +LRD FS YG+I + +
Sbjct: 235 DNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRI 268
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
+FVG LS + S++ L+ F+ +GE+ V D T
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQT 172
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 36.7 bits (81), Expect = 0.005
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 184 GRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKT 300
G +D+K++VG L + +KE+ D F YG I+ + +K+
Sbjct: 4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKS 42
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 36.7 bits (81), Expect = 0.005
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 184 GRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKT 300
G +D+K++VG L + +KE+ D F YG I+ + +K+
Sbjct: 4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKS 42
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 36.3 bits (80), Expect = 0.007
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 130 GNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPN 309
G GGG G++ + + L V LS T++K+LRD F +GEI + D
Sbjct: 53 GGGGGGGGRGRNQQYDRENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRP 112
Query: 310 TGS 318
+G+
Sbjct: 113 SGN 115
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 36.3 bits (80), Expect = 0.007
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 175 EAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTG 315
EA ++ + +++ + W T +L +F YG I+S+ + DP+TG
Sbjct: 17 EARPKNTGQTVYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTG 63
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 35.5 bits (78), Expect = 0.012
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 103 DITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIE 282
+I N++N G G + D +++GGLS+ S+ ++ FS YGE+
Sbjct: 6 NIKNQNRMNERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVM 65
Query: 283 SITVKTDPNTG 315
+I + D +TG
Sbjct: 66 NINLIRDKDTG 76
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTD 303
++RKLF+G LS + +++ LR+ F+ +G IE +V D
Sbjct: 140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSF 345
D K+FVG + + ++ + R F YG + S + D +T + C +F
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTD 303
++RKLF+G LS + +++ LR+ F+ +G IE +V D
Sbjct: 140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSF 345
D K+FVG + + ++ + R F YG + S + D +T + C +F
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTD 303
++RKLF+G LS + +++ LR+ F+ +G IE +V D
Sbjct: 140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSF 345
D K+FVG + + ++ + R F YG + S + D +T + C +F
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTD 303
++RKLF+G LS + +++ LR+ F+ +G IE +V D
Sbjct: 140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSF 345
D K+FVG + + ++ + R F YG + S + D +T + C +F
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTD 303
++RKLF+G LS + +++ LR+ F+ +G IE +V D
Sbjct: 140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSF 345
D K+FVG + + ++ + R F YG + S + D +T + C +F
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTD 303
++RKLF+G LS + +++ LR+ F+ +G IE +V D
Sbjct: 140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSF 345
D K+FVG + + ++ + R F YG + S + D +T + C +F
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTD 303
++RKLF+G LS + +++ LR+ F+ +G IE +V D
Sbjct: 140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSF 345
D K+FVG + + ++ + R F YG + S + D +T + C +F
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 34.7 bits (76), Expect = 0.020
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +1
Query: 127 NGNSEHGGGDGQDNSA---EAPGRDD-----DRKLFVGGLSWETSDKELRDHFSAYG 273
N EHG + ++ E P RD RK+FVGG+ W+ ++ L+D F +G
Sbjct: 263 NFQQEHGNKNRDSDATWFGELPPRDYTSPTFSRKIFVGGVPWDITEAALKDSFGEFG 319
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.036
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPN 309
L+V + + +D LRDHFS++G I S V D N
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN 379
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.036
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPN 309
L+V + + +D LRDHFS++G I S V D N
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN 379
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 32.7 bits (71), Expect = 0.083
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTG 315
++VG ++T+++EL + FS+ G+I ++ + D TG
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETG 43
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 32.7 bits (71), Expect = 0.083
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSV 321
DDRK+ V +S + + +L+ FS YG+I S + + SV
Sbjct: 110 DDRKIVVSNISAKVTQSQLQSFFSQYGKITSCILPREEKKTSV 152
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 32.3 bits (70), Expect = 0.11
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 139 EHGGGDGQDNSAEAPGRD---DDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPN 309
EHG + E R+ + +LF+ L + T + +L+ F YGE+ + V D
Sbjct: 256 EHGASLESRDKEEETVREKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKK 315
Query: 310 TGS 318
TG+
Sbjct: 316 TGA 318
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/83 (19%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +1
Query: 82 NNDNFAQDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRK------LFVGGLSWETSDK 243
+N +F +I ++ + ++ +++A P ++++K +F+G + + ++ +
Sbjct: 10 SNSHFEMEIEAESAILQQIQNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIE 69
Query: 244 ELRDHFSAYGEIESITVKTDPNT 312
E+ +HF G+I T+ D T
Sbjct: 70 EIEEHFKGCGQIVKTTIPKDKFT 92
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 178 APGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPN 309
APG + V L + +K +RD F ++G IE I ++ D N
Sbjct: 120 APGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSN 163
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 178 APGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPN 309
APG + V L + +K +RD F ++G IE I ++ D N
Sbjct: 265 APGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSN 308
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 31.9 bits (69), Expect = 0.14
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +1
Query: 115 DNQLNGNSEHGGGDGQDNSA-EAPGRDDDRK-LFVGGLSWETSDKELRDHFSAYGEIES- 285
D +G GGG N + GR + ++ +FV G+S ++ + D FS G+I
Sbjct: 171 DGPPSGGGYGGGGAASGNREFGSDGRVELKETVFVQGISTTANEAYIADVFSTCGDIAKN 230
Query: 286 -----ITVKTDPNTGSVTRVCLHSFQSA 354
I + TD NTG C+ +F A
Sbjct: 231 DRGPRIKIYTDRNTGEPKGECMITFVDA 258
>Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical
protein Y53C12A.3 protein.
Length = 557
Score = 31.1 bits (67), Expect = 0.25
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +1
Query: 109 TTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI 288
T + + NS GG + N P +L G + WE K+++D F +YG I+
Sbjct: 41 TENTRQRSNSNAGGSPDEQN----PQFGMQAQL--GKMMWEAGSKQVQDTFQSYGRIDLF 94
Query: 289 TVKTDPNTGSVTRVCLHSF 345
D + V + SF
Sbjct: 95 RPYFDVDPAEVRTRLIRSF 113
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 31.1 bits (67), Expect = 0.25
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +1
Query: 175 EAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTG 315
E D + ++VG + + + +E+ HF G + +T++ D +G
Sbjct: 70 EEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSG 116
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 0.25
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 169 SAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI-TVKTDPNTGSVTRVCLHSF 345
SA D +FVG L E +K L D FSA+G I + + D ++G+ +F
Sbjct: 90 SAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149
Query: 346 QS 351
S
Sbjct: 150 AS 151
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 0.25
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 169 SAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI-TVKTDPNTGSVTRVCLHSF 345
SA D +FVG L E +K L D FSA+G I + + D ++G+ +F
Sbjct: 100 SAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 159
Query: 346 QS 351
S
Sbjct: 160 AS 161
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 196 DRKLFVGGLSWETSDKELRDHFSA-YGEIESITVKTDPNTG 315
D +FVG L +E ++ L FSA G +E++ + D +TG
Sbjct: 245 DMAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTG 285
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 30.3 bits (65), Expect = 0.44
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEIESI 288
++FVGG T++ ELR+HF + ++ +
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDV 95
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 30.3 bits (65), Expect = 0.44
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEIESI 288
++FVGG T++ ELR+HF + ++ +
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDV 96
>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
protein Y41E3.9 protein.
Length = 1440
Score = 29.9 bits (64), Expect = 0.58
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 148 GGDGQDNSAEAPGRDDDRK 204
GGDGQ NSA+ DDDR+
Sbjct: 894 GGDGQTNSADVTVNDDDRE 912
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 29.9 bits (64), Expect = 0.58
Identities = 15/83 (18%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +1
Query: 82 NNDNFAQDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRK------LFVGGLSWETSDK 243
++++F +I ++ + ++ +++A P ++++K +F+G + + ++ +
Sbjct: 16 SSNSFEMEIEAESAILEQIQNKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIE 75
Query: 244 ELRDHFSAYGEIESITVKTDPNT 312
E+ +HF G I T+ D T
Sbjct: 76 EVEEHFKGCGHIVRTTIPKDKFT 98
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.5 bits (63), Expect = 0.77
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTG 315
++VG ++T++ +L ++FS G + ++ + D TG
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETG 42
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 178 APGRDDDRKLFVGGLSWETSDKELRDHFSAYGEI 279
APG +D R +FV L + T++ E+R I
Sbjct: 586 APGTEDARTIFVSNLDFTTTEDEIRQAIEGVASI 619
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 217 GLSWETSDKELRDHFSAYGEIESITV 294
GL WE +++ELRD F G IES+ +
Sbjct: 11 GLPWEATEQELRDFFGNNG-IESLEI 35
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 217 GLSWETSDKELRDHFSAYGEIESITV 294
GL WE +++ELRD F G IES+ +
Sbjct: 11 GLPWEATEQELRDFFGNNG-IESLEI 35
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSFQSAR 357
LFV L+ T+D++L FS +G+I + + D +G + F +A+
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAK 293
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSFQSAR 357
LFV L+ T+D++L FS +G+I + + D +G + F +A+
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAK 293
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSFQSAR 357
LFV L+ T+D++L FS +G+I + + D +G + F +A+
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAK 224
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 28.7 bits (61), Expect = 1.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEIESITVK 297
++++G L+ S+K++ F YG+I + +K
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK 35
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 28.7 bits (61), Expect = 1.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEIESITVK 297
++++G L+ S+K++ F YG+I + +K
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK 35
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 28.7 bits (61), Expect = 1.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEIESITVK 297
++++G L+ S+K++ F YG+I + +K
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK 35
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 187 RDDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSFQS 351
R D+ V L E ++ ELRD F G + I + D TG +F+S
Sbjct: 172 RSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 226
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNT 312
+FVG L E +LR+ F +GE+ + D NT
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNT 169
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +1
Query: 199 RKLFVGGLSWETSDKELRDHFSAYGEI 279
RK+F+GGL + S++++ F A+G++
Sbjct: 245 RKVFIGGLPIDVSEEQVWATFGAFGKV 271
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEI 279
+LFVG L E + EL++ FS +G+I
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDI 142
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEI 279
+LFVG L E + EL++ FS +G+I
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDI 142
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEI 279
+LFVG L E + EL++ FS +G+I
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDI 142
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 199 RKLFVGGLSWETSDKELRDHFSAYGEIE 282
RK+FVGGL + ++ + FS YG ++
Sbjct: 88 RKVFVGGLPSCVKESDILNFFSRYGRLQ 115
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 85 NDNFAQDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSD 240
ND + + +N N N+ +GG G N+ G +++ G +WE+++
Sbjct: 430 NDGWGSSSSNNNNNNNNNNNGGTGGYSNNGGGWGSNNNNN-GNDGNNWESNN 480
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 85 NDNFAQDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSD 240
ND + + +N N N+ +GG G N+ G +++ G +WE+++
Sbjct: 430 NDGWGSSSSNNNNNNNNNNNGGTGGYSNNGGGWGSNNNNN-GNDGNNWESNN 480
>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
protein F40F11.2b protein.
Length = 1607
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 73 VMANNDNFAQDITTDNQLNGNS 138
VM NND+FAQ + + N + NS
Sbjct: 93 VMQNNDSFAQHMQSSNTIEYNS 114
>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical
protein F40F11.2a protein.
Length = 1593
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 73 VMANNDNFAQDITTDNQLNGNS 138
VM NND+FAQ + + N + NS
Sbjct: 79 VMQNNDSFAQHMQSSNTIEYNS 100
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 193 DDRKLFVGGLSWETSDKEL-RDHFSAYGEIESI 288
++R+++VG + ++ ++KEL D + Y IE++
Sbjct: 15 ENRQVYVGNMPFDATEKELNNDALTIYDAIEAV 47
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSFQS 351
L++ GL T+D LR+ S YG I S D T + F+S
Sbjct: 109 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFES 157
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 205 LFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSFQS 351
L++ GL T+D LR+ S YG I S D T + F+S
Sbjct: 83 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFES 131
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = +1
Query: 190 DDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGS 318
D K+F+GGL ++ ++++ ++G +++ ++ D S
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNS 330
>L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical
protein R05D3.8 protein.
Length = 187
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 193 DDRKLFVGGLSWET-SDKELRDHFSAYGEIESITVKTDPNTGSVTRVCLHSFQSAR 357
+ ++LFV + + KEL+ +F AYG+I + +D + G + C+ +F +R
Sbjct: 29 ESKRLFVSYFPLDRLTSKELKMNFGAYGKITDVEFVSD-SEGPL-HFCIITFADSR 82
>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
protein.
Length = 1158
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 127 NGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI 288
NGN +G G+G D +AE P +++ VG +S +L + G I SI
Sbjct: 282 NGNHMNGLGNGVDKAAELPVPEEEE---VGRMSKSVLQTKLSNLALQIGYIGSI 332
>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
protein R05C11.3 protein.
Length = 1158
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 127 NGNSEHGGGDGQDNSAEAPGRDDDRKLFVGGLSWETSDKELRDHFSAYGEIESI 288
NGN +G G+G D +AE P +++ VG +S +L + G I SI
Sbjct: 282 NGNHMNGLGNGVDKAAELPVPEEEE---VGRMSKSVLQTKLSNLALQIGYIGSI 332
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = +1
Query: 190 DDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGS 318
D K+F+GGL ++ ++++ ++G +++ ++ D S
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNS 330
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = +1
Query: 190 DDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGS 318
D K+F+GGL ++ ++++ ++G +++ ++ D S
Sbjct: 263 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNS 305
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = +1
Query: 190 DDDRKLFVGGLSWETSDKELRDHFSAYGEIESITVKTDPNTGS 318
D K+F+GGL ++ ++++ ++G +++ ++ D S
Sbjct: 266 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNS 308
>AC006625-4|AAK68276.1| 446|Caenorhabditis elegans Hypothetical
protein C55B7.5 protein.
Length = 446
Score = 26.2 bits (55), Expect = 7.2
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 MANNDNFAQDITTDNQLNGNSEHGGGDGQDNSAEAPGRDDDRKLFVG-GLSWETSDKELR 252
M+ ND + I N+LNG+ +H + E +D+D +E S+++L+
Sbjct: 155 MSQNDEQNEKIIEKNKLNGDQDHNDVMNRLEELEKLEQDNDEMEEAPIPKPFEVSNEDLQ 214
Query: 253 DHFSAYGEIESI-TVKTDP 306
D G++E + V+ DP
Sbjct: 215 D----LGKLEEVEEVEQDP 229
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 130 GNSEHGGGDGQDNSAEAPGRDDDR 201
GN G G+D S PGRD R
Sbjct: 182 GNKGRDGNPGRDGSPGRPGRDGTR 205
>Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical
protein K08F4.2 protein.
Length = 473
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
Frame = +1
Query: 193 DDRKLFVGGLSWET-------SDKELRDHFSAYGEIESI 288
++RK+++GG++ E ++ E++ F YGEIE +
Sbjct: 324 NERKIYLGGITREIVPSNTAQAESEIKQVFYKYGEIEEV 362
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = +1
Query: 202 KLFVGGLSWETSDKELRDHFSAYGEIESITVK 297
++++G L SD+++ F YG++ + +K
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMK 34
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 247 LRDHFSAYGEIESITVKTDPNT 312
+R+ +S +GEI I V DP T
Sbjct: 1 MREFYSQFGEITDIIVMRDPTT 22
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 247 LRDHFSAYGEIESITVKTDPNT 312
+R+ +S +GEI I V DP T
Sbjct: 1 MREFYSQFGEITDIIVMRDPTT 22
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,352,130
Number of Sequences: 27780
Number of extensions: 164317
Number of successful extensions: 725
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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