Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J04
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma... 28 0.26
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 28 0.35
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 1.8
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 24 4.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 24 5.6
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 23 7.5
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 23 7.5
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 23 9.9
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 23 9.9
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 23 9.9
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 23 9.9
>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 28.3 bits (60), Expect = 0.26
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 147 DPFKSTKYLVDCGTQDAINYNQLYLREVLTPEIFSTVLGAPRS 275
+PFKS LVDCG Y+ L + L F + P S
Sbjct: 109 NPFKSWAKLVDCGDIPVTTYDILKAMDQLESAYFQLIARKPSS 151
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 27.9 bits (59), Expect = 0.35
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 63 LAFLLAVFEIGTCLRCYQCNSQQDPGCGDPFKS 161
+ +++ ++ GT Y CN+ GC D FK+
Sbjct: 856 MTWVVIMYGFGTGNLSYDCNAHYHAGCNDVFKA 888
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 1.8
Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +1
Query: 238 LKSSAPSWEPLDLVT-RSSPIPD 303
++++AP WEP+D + SP+P+
Sbjct: 919 VEANAPPWEPIDFSSLLESPVPN 941
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 4.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 33 NMAKITTAITLAFLLAVFEIGTCLRCYQCN 122
NM I + ++L + + E+ CL+ +CN
Sbjct: 614 NMHNIKSVLSLEIDIVLGEMDACLKSLECN 643
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 23.8 bits (49), Expect = 5.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +3
Query: 99 CLRCYQCNSQQDPGCGD 149
C +C CN + DP D
Sbjct: 48 CFKCVNCNKKLDPSSED 64
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 139 DVVIHSKAPNI*WTAGPKTLSITTS 213
+VV+H +A TAG K++S++ S
Sbjct: 1804 EVVLHGEAAKAATTAGVKSVSVSIS 1828
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 23.4 bits (48), Expect = 7.5
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 304 DPVSVTIL*QDLGAPKTVL 248
DPV VTIL LGA KT L
Sbjct: 59 DPVPVTILTGFLGAGKTSL 77
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 23.0 bits (47), Expect = 9.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 62 CYSCSYFCH 36
CYSCS CH
Sbjct: 63 CYSCSISCH 71
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 302 SGIGDDLVTRSRGSQDGAEDFRGQDFTKVELVV 204
+G G V +R ++D DF+G++F +VV
Sbjct: 37 NGFGFVEVEDARDARDIVNDFQGKEFMGSRIVV 69
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 126 QQDPGCGDPFKSTKYLVDCGTQDAINYNQLYLREVLTPEIFSTVL 260
+++ GDP ++ YL + + NYN + VL ++T++
Sbjct: 86 KENDSTGDPLYNSPYLRNLYFRADPNYNMRFTVPVLWDSKYNTIV 130
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 138 GCGDPFKSTKYLVDCGTQDAINYNQLY 218
GCG F TK + I NQLY
Sbjct: 237 GCGADFVKTKQSPPLALEGKIKPNQLY 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,424
Number of Sequences: 5004
Number of extensions: 25779
Number of successful extensions: 71
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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