Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J04
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 31 0.17
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 28 1.6
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 27 2.8
04_04_0195 - 23488490-23488891,23489016-23489243,23489348-234894... 27 3.7
09_04_0549 + 18478475-18478664,18479381-18480648 26 4.9
09_04_0547 + 18467016-18467205,18467922-18469189 26 4.9
10_08_0528 + 18562504-18562568,18563058-18563208,18563296-185633... 26 6.5
11_01_0791 + 6627961-6630702 25 8.6
11_01_0539 + 4268326-4268450,4268586-4268751 25 8.6
09_06_0324 + 22343508-22343561,22343789-22343860,22344165-223442... 25 8.6
05_03_0319 - 12332483-12333033,12334528-12334552 25 8.6
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 25 8.6
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 31.1 bits (67), Expect = 0.17
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 166 LVLLNGSPHPGSC*ELHW*QRKQVPISNT 80
LVL GS PG C EL W K VP+ T
Sbjct: 661 LVLRRGSAVPGPCKELFWKMCKHVPLRTT 689
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 63 LAFLLAVFEIGTCLRCYQCNSQQDPGCGDPFKSTKYL 173
+ F FE LR +Q N D CG F S KYL
Sbjct: 798 IEFCDMTFETKAELRAHQRNICTDESCGKRFSSHKYL 834
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 187 PKTLSITTSSTFVKS*PLKSSAPSWEPLDLVTRSSPIPD 303
P +S + S + P+K +P EP DL+ + P PD
Sbjct: 307 PPPVSTSESEPEPEPEPVKEVSPVHEPTDLLGMNEPTPD 345
>04_04_0195 -
23488490-23488891,23489016-23489243,23489348-23489481,
23489685-23489899,23490049-23490142,23490293-23490526,
23490643-23490736
Length = 466
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 103 KQVPISNTAKRKASVIAVVIFAMFY 29
K P N +KAS+I++V+ FY
Sbjct: 261 KAPPAENKTMKKASIISIVVTTFFY 285
>09_04_0549 + 18478475-18478664,18479381-18480648
Length = 485
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +3
Query: 99 CLRCYQCNSQQDPGCGDPFKSTKYLVDCGTQD 194
C C C QQDP ST V CG +
Sbjct: 177 CKPCADCYEQQDPLFDPSLSSTYAAVACGAPE 208
>09_04_0547 + 18467016-18467205,18467922-18469189
Length = 485
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +3
Query: 99 CLRCYQCNSQQDPGCGDPFKSTKYLVDCGTQD 194
C C C QQDP ST V CG +
Sbjct: 177 CKPCADCYEQQDPLFDPSLSSTYAAVACGAPE 208
>10_08_0528 +
18562504-18562568,18563058-18563208,18563296-18563362,
18563470-18563704,18564655-18564865
Length = 242
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Frame = +3
Query: 99 CLRCYQ---CNSQQDPGCGDPFKST 164
CLRCYQ SQ P C D K T
Sbjct: 166 CLRCYQDWNSRSQSCPFCRDNLKKT 190
>11_01_0791 + 6627961-6630702
Length = 913
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 171 LVDCGTQDAINYNQLYLREVLTPE 242
L++CG I YN+ L E+L PE
Sbjct: 165 LLECGDPVGIEYNRKRLLELLYPE 188
>11_01_0539 + 4268326-4268450,4268586-4268751
Length = 96
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 101 TGTNFKYCQKEGECYSCSYFCHVLFLTDK 15
TG++ + + + C SC C L LT K
Sbjct: 63 TGSDLTWVECDAPCQSCHQACVALLLTPK 91
>09_06_0324 +
22343508-22343561,22343789-22343860,22344165-22344200,
22344466-22344517,22344638-22344718,22344900-22345018,
22345114-22345333,22345507-22345625,22345717-22345842,
22346092-22346232,22346773-22347096
Length = 447
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 171 LVDCGTQDAINYNQLYLREV 230
L D GTQ A + N LYLREV
Sbjct: 142 LSDFGTQGADSNNILYLREV 161
>05_03_0319 - 12332483-12333033,12334528-12334552
Length = 191
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -2
Query: 147 HHILDLVENYTGNSVNR-YQFQIL 79
H ILD+V+N N+VN+ +QF +L
Sbjct: 167 HGILDIVDNKEFNTVNQLFQFAML 190
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = -1
Query: 187 VPQSTRYLVLLNGSPHPGSC*E------LHW*QRKQVPISNTAKRKA 65
VP+S +V ++G HPG LH QRK VP SNT + A
Sbjct: 453 VPKSEDRIVFISGPAHPGDGISPAQNAILHV-QRKIVPTSNTKEGPA 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,589,310
Number of Sequences: 37544
Number of extensions: 167320
Number of successful extensions: 387
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -