Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J02
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522 29 2.1
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 29 2.1
01_06_0644 + 30821811-30821855,30822707-30822976,30823079-308243... 29 2.1
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 28 6.4
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 28 6.4
07_03_1665 + 28480745-28480916,28481347-28481612 27 8.5
02_03_0349 + 18010414-18014283 27 8.5
02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705... 27 8.5
01_06_0014 + 25583997-25584372,25584411-25584445 27 8.5
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 27 8.5
>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
Length = 766
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -2
Query: 276 YLDERVASRYCMDQMLEPPHRP--EPCRRVHEDGTSRHRY-DCHCRRLEEYQ 130
YL ERV ++ + Q + PP RP + R+ G R + + H ++E++
Sbjct: 405 YLPERVMRQFGLRQSIPPPFRPTLQALHRISRRGRERENWEETHHEYIQEWE 456
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +1
Query: 94 RLASVVHQNAPLLILFQSAAVTVVPMSRRAIFVHTPAGLRPMWWFKHLVHAVTRRHTFVE 273
++ +V+ + L + + PM+ AI +G P WW + RRH
Sbjct: 318 KVEAVIKRERALAYAYSHQLLKATPMAAHAILADLQSGRNPWWW-----TPIERRHEAEA 372
Query: 274 VVAPVDRQ 297
A + RQ
Sbjct: 373 AAALLSRQ 380
>01_06_0644 +
30821811-30821855,30822707-30822976,30823079-30824383,
30824551-30824692,30824752-30825275
Length = 761
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -2
Query: 276 YLDERVASRYCMDQMLEPPHRP--EPCRRVHEDGTSRHRY-DCHCRRLEEYQ 130
YL ERV ++ + Q + PP RP + R+ G R + + H ++E++
Sbjct: 422 YLPERVMRQFGLRQSIPPPFRPTLQALHRISRRGRERENWEETHHEYIQEWE 473
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 276 YLDE-RVASRYCMDQMLEPPHRPEPCRRVHEDGTSRHRYD 160
YL E R +SRY EP RPE + E +S HR D
Sbjct: 631 YLREHRSSSRYSQLAAAEPSDRPEWTHQFQERPSSSHRKD 670
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 342 TLKDFEH-IKYLSSNSLQYTDASVDTSDSGKPDSPEP 449
T++D E IKYL+ + ++ + +V+ S G+P +P P
Sbjct: 157 TVEDAERCIKYLNQSVMEGRNITVEKSRRGRPRTPTP 193
>07_03_1665 + 28480745-28480916,28481347-28481612
Length = 145
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 138 LPVCGSDSRTYVSTCHLRAHACRAQADVVVQAFGPCSNET 257
L V G + V++ A R QADVVV + PC+N T
Sbjct: 7 LVVIGVAVVSVVASAAPPAQPPRIQADVVVMGYVPCNNGT 46
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 18 TQLPATNCDRMTC-YFGAHCLIRSGLATCECSASECPPTDTLPVCGSDSRTYVSTC-HLR 191
++L +NC +T + G L+ +C++ C P D+ C S + C +L
Sbjct: 962 SKLMISNCPYITTLWHGCSLYALEELSIQQCASLSCLPEDSFSSCSSLKTLEIVKCPNLI 1021
Query: 192 AHACRAQADVVVQAFGPCSN 251
A + FG C+N
Sbjct: 1022 ARQIMLPHTMRTITFGLCAN 1041
>02_02_0129 +
7055896-7056135,7056404-7056771,7056816-7056928,
7057014-7057118,7057283-7057860,7057889-7058346,
7058430-7058681,7058762-7058872,7058960-7059020,
7059122-7059214,7059292-7059477
Length = 854
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 367 LMCSKSL--SVLLGACACEFLRVIVLVDL-LERLPRRTC 260
L+C K L +VL G ACEFLRV E LPR C
Sbjct: 761 LLCHKQLRGTVLCGYYACEFLRVNGRYRTNAEDLPRLEC 799
>01_06_0014 + 25583997-25584372,25584411-25584445
Length = 136
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 441 PEPELTCIDILPPIGYR 491
P+P LTCI + PP +R
Sbjct: 45 PDPNLTCIAVAPPTAWR 61
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -2
Query: 276 YLDERVASRYCMDQMLEPPHRP--EPCRRVHEDGTSRHRY-DCHCRRLEEYQ 130
YL ERV ++ + Q + PP RP + R+ G + + H ++E++
Sbjct: 1435 YLPERVMRQFGLRQSIPPPFRPTLQALHRISRRGREHENWEETHHEYIQEWE 1486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,950,922
Number of Sequences: 37544
Number of extensions: 342695
Number of successful extensions: 999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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