Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J02
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              36   4e-04
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   6.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +3

Query: 39  CDRMTCYFGAHCLI--RSGLATCECSASECPPTDTLPVCGSDSRTYVSTCHLRAHACRAQ 212
           C    C  G  C +   S +A C C   +CP     PVC S+ + Y + C L   AC + 
Sbjct: 82  CASKYCGIGKECELSPNSTIAVCVCMR-KCPRRHR-PVCASNGKIYANHCELHRAACHSG 139

Query: 213 ADVVVQAFGPC 245
           + +       C
Sbjct: 140 SSLTKSRLMRC 150


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 438 CQVCRYRLCL 409
           CQ CRY+ CL
Sbjct: 162 CQYCRYQKCL 171


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 438 CQVCRYRLCL 409
           CQ CRY+ CL
Sbjct: 162 CQYCRYQKCL 171


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 480 SVEGCQCKSVRAQGCQVCRYRLCLLKRQCTVKSLSLN 370
           S EGC+    R    Q  +YR C   +QC++  ++ N
Sbjct: 83  SCEGCK-GFFRRSIQQKIQYRPCTKNQQCSILRINRN 118



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/20 (30%), Positives = 9/20 (45%)
 Frame = -2

Query: 468 CQCKSVRAQGCQVCRYRLCL 409
           C    +    CQ CR + C+
Sbjct: 110 CSILRINRNRCQYCRLKKCI 129


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 468 CQCKSVRAQGCQVCRYRLCL---LKRQCTV 388
           C+      + CQ CR + CL   ++ +C V
Sbjct: 229 CEIDMYMRRKCQECRLKKCLTVGMRPECVV 258


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 468 CQCKSVRAQGCQVCRYRLCL---LKRQCTV 388
           C+      + CQ CR + CL   ++ +C V
Sbjct: 26  CEIDMYMRRKCQECRLKKCLTVGMRPECMV 55


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 501 NNSSDTQSVEGCQCKS---VRAQGCQVCRYRLCLLKRQCTVKSLSLN 370
           ++ SD Q+ EG    S    R    Q  +YR C   +QC++  ++ N
Sbjct: 23  SSDSDGQTDEGFVGDSQGFFRRSIQQKIQYRPCTKNQQCSILRINRN 69



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/20 (30%), Positives = 9/20 (45%)
 Frame = -2

Query: 468 CQCKSVRAQGCQVCRYRLCL 409
           C    +    CQ CR + C+
Sbjct: 61  CSILRINRNRCQYCRLKKCI 80


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 210 EPCRRVHEDGTSRHRYD 160
           EPC+RVH        YD
Sbjct: 54  EPCQRVHSSRIPDLSYD 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,770
Number of Sequences: 438
Number of extensions: 3527
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)