Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J01
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 326 2e-90
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 326 2e-90
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 326 2e-90
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 91 2e-19
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 81 2e-16
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 71 2e-13
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.13
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 3.7
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 4.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 4.9
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 6.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 326 bits (801), Expect = 2e-90
Identities = 144/199 (72%), Positives = 171/199 (85%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G
Sbjct: 162 QARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221
Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
+GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 222 KGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281
Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 549
+TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQ
Sbjct: 282 GVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ 341
Query: 550 VIVLNHPGQISNGYTPVLD 606
VI+LNHPGQIS GY+PVLD
Sbjct: 342 VIILNHPGQISAGYSPVLD 360
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 326 bits (801), Expect = 2e-90
Identities = 144/199 (72%), Positives = 171/199 (85%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G
Sbjct: 162 QARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221
Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
+GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 222 KGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281
Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 549
+TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQ
Sbjct: 282 GVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ 341
Query: 550 VIVLNHPGQISNGYTPVLD 606
VI+LNHPGQIS GY+PVLD
Sbjct: 342 VIILNHPGQISAGYSPVLD 360
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 326 bits (801), Expect = 2e-90
Identities = 144/199 (72%), Positives = 171/199 (85%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G
Sbjct: 162 QARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221
Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
+GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 222 KGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281
Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 549
+TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQ
Sbjct: 282 GVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ 341
Query: 550 VIVLNHPGQISNGYTPVLD 606
VI+LNHPGQIS GY+PVLD
Sbjct: 342 VIILNHPGQISAGYSPVLD 360
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 90.6 bits (215), Expect = 2e-19
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 4/202 (1%)
Frame = +1
Query: 10 ESRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLEPSTK--MPWFKGWLVERKE 180
E RF+EIK VS + IK +G+ + V FVPIS G N+++ + W+KG
Sbjct: 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG------- 384
Query: 181 GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVF 360
L+ ALD ++PP +P K LRL + DVY+ TV GRVE G ++ V+
Sbjct: 385 -----PTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYD 438
Query: 361 APANITTEVKSVEMHHEALQE-AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAAD 537
+ VK+V + + AV GD V + ++ V +LR G + + + NP R
Sbjct: 439 VSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE-NPVRRVRS 497
Query: 538 FTAQVIVLNHPGQISNGYTPVL 603
F A++ + G I +G T VL
Sbjct: 498 FVAEIQTFDIHGPILSGSTLVL 519
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 80.6 bits (190), Expect = 2e-16
Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 5/203 (2%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWLVERK 177
E R++E ++S +++++ GYN V ++P+S + G N+ + S+ PW+
Sbjct: 395 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWY-------- 446
Query: 178 EGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVV 357
+G L+E LD++ R + +P+ YK +GT+ G++E G +K + V+
Sbjct: 447 ----QGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVL 500
Query: 358 FAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAA 534
P N T EV ++ + E + ++ GD V V+ +++ GYV +K NP
Sbjct: 501 VMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTK-NPVHATT 558
Query: 535 DFTAQVIVLNHPGQISNGYTPVL 603
F AQ+ +L P ++ GY+ V+
Sbjct: 559 RFIAQIAILELPSILTTGYSCVM 581
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 70.5 bits (165), Expect = 2e-13
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Frame = +1
Query: 202 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGT--VVVFAPAN 372
L+EA+D+ + P R TD + ++DV+ I G GTV GRVE G LK G +V ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 373 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 495
+ T V +EM + L AV GDN G ++++ ++L+RG +
Sbjct: 294 LKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMI 334
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.1 bits (67), Expect = 0.13
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = -3
Query: 479 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 300
N+ + + T+ + + ASC S + + +SVV+ + +T TV + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 299 PIPPILYTSC 270
+P +C
Sbjct: 115 YVPYTSSVAC 124
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 401 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 532
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -2
Query: 282 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 115
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 398 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 282
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 35 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 184
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 1 ARGESRFEEIKKEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 159
A G+ KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 148 ASGKMEKNNSFKEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.136 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,614
Number of Sequences: 5004
Number of extensions: 59642
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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