Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J01
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 334 3e-92
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 334 3e-92
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 334 3e-92
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 86 2e-17
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 59 3e-09
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 59 3e-09
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 55 3e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 55 3e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 55 3e-08
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 55 5e-08
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 54 1e-07
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 54 1e-07
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 50 2e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 50 2e-06
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.030
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.030
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.64
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 0.84
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.84
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 1.1
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 1.1
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 1.5
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 1.5
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 1.9
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical p... 28 4.5
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 4.5
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 4.5
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 7.9
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 7.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 334 bits (821), Expect = 3e-92
Identities = 154/199 (77%), Positives = 172/199 (86%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
E+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A
Sbjct: 130 EARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNA 189
Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP
Sbjct: 190 SGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQ 249
Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 549
N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQ
Sbjct: 250 NVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 309
Query: 550 VIVLNHPGQISNGYTPVLD 606
VI++NHPGQISNGYTPVLD
Sbjct: 310 VIIMNHPGQISNGYTPVLD 328
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 334 bits (821), Expect = 3e-92
Identities = 154/199 (77%), Positives = 172/199 (86%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
E+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A
Sbjct: 164 EARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNA 223
Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP
Sbjct: 224 SGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQ 283
Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 549
N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQ
Sbjct: 284 NVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 343
Query: 550 VIVLNHPGQISNGYTPVLD 606
VI++NHPGQISNGYTPVLD
Sbjct: 344 VIIMNHPGQISNGYTPVLD 362
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 334 bits (821), Expect = 3e-92
Identities = 154/199 (77%), Positives = 172/199 (86%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
E+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A
Sbjct: 164 EARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNA 223
Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP
Sbjct: 224 SGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQ 283
Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 549
N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQ
Sbjct: 284 NVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 343
Query: 550 VIVLNHPGQISNGYTPVLD 606
VI++NHPGQISNGYTPVLD
Sbjct: 344 VIIMNHPGQISNGYTPVLD 362
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 86.2 bits (204), Expect = 2e-17
Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 2/200 (1%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGK 186
E RF+EI+ +++ +++K+G+NP + +VP SG G + + T W
Sbjct: 266 EERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG--NWY------- 316
Query: 187 AEGKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA 363
G C IE +D +LP R + +R + + Y +GTV +G++E+G ++ G +V
Sbjct: 317 -SGPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVM 373
Query: 364 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFT 543
P +V + + V GDN+ F +K + EL+ G++ + G F
Sbjct: 374 PNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FD 432
Query: 544 AQVIVLNHPGQISNGYTPVL 603
A+V+VL H I++GY+ VL
Sbjct: 433 AEVLVLEHRSIIASGYSCVL 452
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGK 186
+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+
Sbjct: 325 QDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY----------- 370
Query: 187 AEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFA 363
+G CL+E +D+ + P P+D LR+ + DV K+ V G++E+G + K V + +
Sbjct: 371 -DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMS 429
Query: 364 PANITT 381
T
Sbjct: 430 SVTAAT 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Frame = +1
Query: 10 ESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGK 186
+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+
Sbjct: 343 QDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWY----------- 388
Query: 187 AEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFA 363
+G CL+E +D+ + P P+D LR+ + DV K+ V G++E+G + K V + +
Sbjct: 389 -DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMS 447
Query: 364 PANITT 381
T
Sbjct: 448 SVTAAT 453
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 181 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 354
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 285
Query: 355 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 495
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 286 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 181 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 354
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 355 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 495
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 181 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 354
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 355 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 495
+ T VKSV E + + +A PGD +G ++ + K++RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +1
Query: 268 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 435
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCG 436
Query: 436 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 603
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 437 QSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 491
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 53.6 bits (123), Expect = 1e-07
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 26 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 202
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 203 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 301
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +1
Query: 268 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 435
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCG 437
Query: 436 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 603
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 438 QSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 492
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 202 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANI 375
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 376 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 501
T +++ ++++E GD+ G + V ++RG AG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +1
Query: 202 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANI 375
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 376 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 501
T +++ ++++E GD+ G + V ++RG AG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +1
Query: 268 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITT----EVKSVEMHHEALQEAVPG 435
++++Y + +G V G + G L G V+ P T V S+ +A+ PG
Sbjct: 407 IEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPG 466
Query: 436 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 567
+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 467 EAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.5 bits (78), Expect = 0.030
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 223 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 402
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 403 HHEALQEAVPGDNVGFNV 456
+ + + G F V
Sbjct: 251 WKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.030
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 223 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 402
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 403 HHEALQEAVPGDNVGFNV 456
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.64
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = -3
Query: 560 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPG-TASCRASWCISTDLT 384
ST T A+ + P ++ P + T +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 383 SVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 279
V + +TVP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 0.84
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 431 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 282
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 0.84
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 431 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 282
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -3
Query: 551 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 372
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 371 LAGAKTTTVPGFRIPVSTLPT 309
+ T+T+P P PT
Sbjct: 528 TTTSTTSTLPK---PAEATPT 545
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -3
Query: 560 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDL 387
++ T S AP GGLF + T P + T T +P T +T
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTT 506
Query: 386 TSVVMLAGAKTTTVPGF-RIPVSTLPTGTVPIP 291
+ G +TV +P +T T T+P P
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 27.5 bits (58), Expect = 7.9
Identities = 30/94 (31%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Frame = -3
Query: 569 G*FSTMTCAVKSAAPLGGLFFESPAT---*PRRNSL------TDTFLTLKPTLSPGTASC 417
G F + T A AAP GLF S T P SL T T + P S G
Sbjct: 387 GLFGSSTPAKTPAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFG 446
Query: 416 RASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTL 315
+S L GA TTT P P L
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGL 480
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 503 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 345
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 344 PGFRIP 327
PG+ P
Sbjct: 164 PGYLPP 169
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 503 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 345
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 344 PGFRIP 327
PG+ P
Sbjct: 164 PGYLPP 169
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 503 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 345
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 344 PGFRIP 327
PG+ P
Sbjct: 164 PGYLPP 169
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 503 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 345
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 344 PGFRIP 327
PG+ P
Sbjct: 164 PGYLPP 169
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 337 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 462
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 419 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 297
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical
protein F54B11.11 protein.
Length = 598
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = -3
Query: 455 TLKPTLSPGTASCRASWCISTDLTSV---VMLAGAKTTTVPGFRIPVSTLPTGTVPIPPI 285
T +P LS T+S + +T +T+ ++ A TTT P P +T T PP+
Sbjct: 471 TTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTTTPPVTSAPATTFITPVPFTPPV 530
Query: 284 -----LYTSCRGRRRALSVG 240
+Y+S G + ++G
Sbjct: 531 TNSTTIYSSNTGSTLSTTIG 550
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -3
Query: 419 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 240
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 239 RAG 231
+ G
Sbjct: 273 KEG 275
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -3
Query: 419 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 240
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 239 RAG 231
+ G
Sbjct: 273 KEG 275
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 5.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 333 PKAWYCCRFCP 365
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 125 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 262
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -2
Query: 303 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 154
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.136 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,486,156
Number of Sequences: 27780
Number of extensions: 352828
Number of successful extensions: 911
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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