Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I23
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.37 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   4.5  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   6.0  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   6.0  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   7.9  
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    25   7.9  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +1

Query: 118 PPSVLQSDQHDAELLKDEYDRPLATPRHEEPHYSLGDFEPLPQEPTPQP 264
           PP  ++    DA    D Y    A      P Y+    +PLP  P P P
Sbjct: 195 PPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPP 243


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 115 APPSVLQSDQHDAELLKDEYDRPLATPRHEEPHYSLGDFEPLPQEPTPQPD 267
           APPS+  +  + A        R  A+P+H +      DF+  P EP+  P+
Sbjct: 235 APPSIPANSNNSAS----PNQRIKASPKHADTDVLGLDFDMTPSEPSSFPE 281


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 363 KYIDMNKIHHKFDNNV 316
           +Y+D  +IHH +DN +
Sbjct: 56  RYLDTKEIHHTWDNTI 71


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 61  SDYAPPSVLNTQLSLDDLAPPSVLQ-SDQHDAELLKDEYDRPLATPRHEEPH 213
           S+ A PS L    +LD  A  S  + S  HD  + K+E D+    P  +E H
Sbjct: 187 SESASPSALQ---ALDSTAAGSSKEHSSPHDETVKKEENDKDQYPPMTKEQH 235


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 79  SVLNTQLSLDDLAPPSVLQSDQHDAELLKDEYDRPLATPRHEEPHYSLGDFEPLPQEP-T 255
           S +++   L    P   +  +++ +   +     P+AT  HE   +  G   P+  +P  
Sbjct: 549 STVDSNSVLSPAMPKGYMFVNENQSMKHESSVSNPVATIPHENGKHDFGQLSPIEHKPFF 608

Query: 256 PQPDFE 273
           P+ D E
Sbjct: 609 PKNDDE 614


>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +1

Query: 7   GNE*GISVTGT--CGECPAISDYAP---PSVLNT 93
           GN+  IS  G   CG+C   +D+AP   P   NT
Sbjct: 123 GNQQSISDDGAAECGDCYGAADFAPEDTPGCCNT 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,739
Number of Sequences: 5004
Number of extensions: 29067
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)