Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I23
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0032 + 31182115-31182390,31182801-31183459,31183597-311837... 35 0.039
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 32 0.28
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 31 0.48
03_01_0586 - 4339090-4339194,4340186-4340366,4340531-4340601,434... 30 1.1
11_06_0610 - 25449085-25453284 29 2.6
07_03_1072 - 23755657-23755662,23755964-23756137,23757144-237573... 29 2.6
12_01_0877 - 8415186-8415272,8415696-8416310 28 4.5
02_04_0382 - 22501041-22501279,22501717-22501810 28 4.5
02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333 27 6.0
02_03_0259 + 16934848-16935599,16935659-16935911 27 6.0
05_04_0261 - 19505647-19506828 27 7.9
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 27 7.9
>03_06_0032 +
31182115-31182390,31182801-31183459,31183597-31183740,
31184025-31184061
Length = 371
Score = 34.7 bits (76), Expect = 0.039
Identities = 29/74 (39%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +1
Query: 70 APPSV-LNTQLSLDDLAPPSVLQSDQHDAELLKDEYDRPLATPRHEEPHYSLGDFEPLPQ 246
APP + L Q S+ + APP S QH A L+ PLA H P Y G P PQ
Sbjct: 80 APPGISLAPQFSMANYAPPP---SYQHPATLVSP----PLAAGLHPYPPYLHGVDAPPPQ 132
Query: 247 ---EPTPQPDFEQL 279
P P P F L
Sbjct: 133 WPPRPAPPPSFSVL 146
>01_06_0116 - 26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 31.9 bits (69), Expect = 0.28
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +1
Query: 19 GISVTGTCGECPAISDYAPPSVLNTQLSLDDLAPPSVLQSDQ--HDAELLK----DEYDR 180
GI VT P + APP ++ + ++D+APP +++ D+ DA K DE
Sbjct: 1015 GIGVTSPASIEPG-NVGAPPVIIEPDVGMEDVAPPKIVEPDEGMEDAAPPKIVEPDEGME 1073
Query: 181 PLATPRHEEPHYSLGDF-EPLPQEP 252
A P+ EP + + P +EP
Sbjct: 1074 DAAPPKIVEPDQGMEEVASPTIKEP 1098
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 31.1 bits (67), Expect = 0.48
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 120 RCQIIEGQLRVQHRGWRIVRYSW 52
R +++ G L RGWR+VR +W
Sbjct: 58 RARVVRGSLVAHFRGWRVVRETW 80
>03_01_0586 -
4339090-4339194,4340186-4340366,4340531-4340601,
4340689-4340826,4341342-4342337
Length = 496
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 46 ECPAISDYAPPSVLNTQ-LSLDDLAPPSVLQSDQHDAELLKDEYDRP 183
E ++S + P SV+ + LSLDDL S + D D + EYD P
Sbjct: 231 EPDSVSTFEPNSVIEPENLSLDDLDHISDDEPDASDTDEPSGEYDEP 277
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = +1
Query: 52 PAISDYAPPSVLNTQLSLDDLAPPSVLQSDQHDAELLKDEYDRPLATPRHEEPHYSLGDF 231
P+ +Y PPS + ++ +PPS + + + ++ P TP+ P +
Sbjct: 926 PSHEEYVPPSPAKSTPPPEEKSPPS--HTPESSSPPSEESEPPPSPTPKSSPPSHE-EYV 982
Query: 232 EPLPQEPTPQPD 267
P P + TP P+
Sbjct: 983 PPSPAKSTPPPE 994
>07_03_1072 -
23755657-23755662,23755964-23756137,23757144-23757380,
23758109-23758215,23758304-23758841
Length = 353
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 247 LGAKAQSLRDCNGVPHASVLPAADRTRLLVVLHRADHFARPM 122
+ A A +LR +P S L A R +LL+ RAD RP+
Sbjct: 1 MSAAAAALRPTEPLPLPSGLSLAPRLKLLLTFFRADLSVRPV 42
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 115 APPSVLQSDQHDAELLKDEYDRPLATPRHEEPHYSLGDFEPLPQEPTP 258
A P +D +A L K E +P + PR EP P P+EPTP
Sbjct: 141 ALPRTEITDDIEATLPKKEEPKPPSPPREAEPEPE--PPLPPPEEPTP 186
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1
Query: 151 AELLKDEYDRPLATPRHEEPHYSLGDFEPLPQ----EPTPQPDF 270
AE D+ D P +P HE+P S ++P P +P PD+
Sbjct: 28 AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDY 71
>02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333
Length = 588
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 43 GECPAISDYAPPSVLNTQLSLDDLAPPSVLQSDQHDAEL 159
GE +SD+APP+V+ + + PP +L+S + +L
Sbjct: 45 GEPLPVSDHAPPAVIVHRPVVAPSTPPPLLRSIEQQQQL 83
>02_03_0259 + 16934848-16935599,16935659-16935911
Length = 334
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 217 CNGVPHASVLPAADRTRLLVVLHRADHFARPM-AVPNHRGTAACSAQR 77
C G LP DRT + V R D FA PM + P R ++ A R
Sbjct: 196 CAGDRKLPELPVIDRTLIRDVPDRHDEFAAPMRSSPTPRAASSRPAPR 243
>05_04_0261 - 19505647-19506828
Length = 393
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 193 VLPAADRTRLLVVLHRADHFARPMAVPN-HRGTAACSAQRVAHSPI 59
+ P A RLLV++ RA A A PN H A R + SP+
Sbjct: 1 MFPTAGGRRLLVLIRRASAAAAAGANPNHHHHHATLFTHRYSSSPL 46
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 153 CIVLITLQDRWRCQIIEGQL 94
CI+ TL+D W ++++G+L
Sbjct: 614 CIITATLKDNWFAKLVQGKL 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,269,801
Number of Sequences: 37544
Number of extensions: 220838
Number of successful extensions: 700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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