Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I22
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    27   1.7  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   2.2  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   2.2  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    26   2.9  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   2.9  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    24   8.9  

>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 81  GPNKYFFRCFFKFVSKDFHNPNVLLVFSE-FNKRDHFNISEKNEFIFIKRFMAINQDFSR 257
           GP    F C   +++K F   NV +V+ E F +    ++S K    F+ RF+    D + 
Sbjct: 140 GPGTCVFICLLGYLAK-FLGKNVKIVYVESFARVKSLSLSGKILMPFVDRFLVQWPDLAT 198

Query: 258 TLKANPY 278
             K   Y
Sbjct: 199 KYKRAEY 205


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 397 RYTFLKDAFTQNFSFHVSDIF 335
           RYTF   + T N+  HV DI+
Sbjct: 223 RYTFTDFSITTNWQLHVEDIY 243


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/51 (21%), Positives = 28/51 (54%)
 Frame = -2

Query: 238 IAINLLIKINSFFSDILK*SRLLNSENTNRTFGL*KSLETNLKKHLKKYLF 86
           + I  +  + S+ S  ++   +LN   +N++ G+ +++   + K +K +LF
Sbjct: 71  VIIKQISMVRSYSSGDVENPEILNKNESNQSSGVKRAMPFRVLKKMKSFLF 121


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 329 TVKNIRNMEAKVLCE-CVLKKGVTVKNETQVSNLM 430
           T+K+  N++  ++ + CV+ KGV V N   + N++
Sbjct: 377 TIKDNSNIKKSIIGKNCVIGKGVVVSNSILMDNIV 411


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 25  VMRLIIFKIIDFNFLIVKWGQISTFSDVFLNLFLKTFIIQMF 150
           ++ L I   ID N+L+     IS   +VFL++F  TF+ + F
Sbjct: 7   ILILYISLSIDNNYLVTTL--ISLKENVFLHIFTLTFLFKAF 46


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 390 PFLRTHSHKTLASMFLIFFTVHVNIITTRIKLLS 289
           PF+  +    LA+ FL+ + +H +I  T I+L S
Sbjct: 25  PFVSAYLSFVLANGFLLKWLIHYSIGPTIIRLFS 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,044
Number of Sequences: 5004
Number of extensions: 28944
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)