Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I22
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233...    28   2.9  
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056...    28   2.9  
02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764...    28   3.8  
08_02_0013 - 11251368-11252867                                         27   6.6  
01_05_0307 - 20701860-20702168,20702291-20703083,20703183-207032...    27   6.6  
01_01_1040 - 8203087-8203631,8205489-8205524,8205731-8205869           27   6.6  

>08_02_0746 +
           20721421-20721649,20722912-20722971,20723318-20723377,
           20723458-20723553,20723764-20723871,20724037-20724090,
           20724275-20724414,20724499-20724570,20724642-20724692,
           20724943-20725017,20725205-20725585,20726372-20727604,
           20727679-20727831
          Length = 903

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  PNKYFFRCFFKFVSKDFHNPNVLLVFS-EFNKRDHFNISEKNEFIFIKRFMAINQD 248
           P+K +   + ++ +   +N  + + F  E  +   F I+E  +F   + F+A+NQ+
Sbjct: 570 PSKLWSHYYIEYQAMRMYNRKIFIKFQVELKRTTRFQINEVEKFKTYEVFLALNQN 625


>05_05_0267 -
           23704249-23704401,23704476-23704780,23704967-23705674,
           23707772-23708114,23708300-23708374,23708625-23708675,
           23708747-23708818,23708903-23709042,23709227-23709280,
           23709446-23709553,23709769-23709864,23709946-23710005,
           23710352-23710411,23711699-23711927
          Length = 817

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  PNKYFFRCFFKFVSKDFHNPNVLLVFS-EFNKRDHFNISEKNEFIFIKRFMAINQD 248
           P+K +   + ++ +   +N  + + F  E  +   F I+E  +F   + F+A+NQ+
Sbjct: 546 PSKLWSHYYIEYQAMRMYNRKIFIKFQVELKRTTRFQINEVEKFKTYEVFLALNQN 601


>02_02_0191 +
           7642942-7642944,7643405-7643513,7643578-7643886,
           7644697-7644839
          Length = 187

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 411 VSFFTVTPFLRTHSHKTLASMFLIFFTVHVNIITTRIK 298
           ++FF    F +  + K+ A   LI+ T ++NI   R++
Sbjct: 60  ITFFRANVFFKNFNVKSPADKLLIYLTFYINIALKRLE 97


>08_02_0013 - 11251368-11252867
          Length = 499

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 429 IRFET*VSFFTVTPFLRTHSHKTLASMFLIFFTVHVNIITTRIKLLST-TNYKG*LLM 259
           +   T  S   V P L TH H   A   L+ F    N+I+    L +T T++    LM
Sbjct: 138 LNLATAASIGVVLPALSTHCHLCAADGLLVLFNKATNLISLLDPLTNTITDFPAIFLM 195


>01_05_0307 -
           20701860-20702168,20702291-20703083,20703183-20703278,
           20703391-20703518
          Length = 441

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 86  WPHFTIRKLKSIILNMM 36
           WPH  ++ LKS+ILN M
Sbjct: 325 WPHRKMKSLKSLILNEM 341


>01_01_1040 - 8203087-8203631,8205489-8205524,8205731-8205869
          Length = 239

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 375 HSH-KTLASMFLIFFTVHVNIITTRIKLLSTTNYKG*LLMFVKNL 244
           H+H +    +F+++  + V  +TT  KLLS T  +G + +F + L
Sbjct: 128 HTHPRATEVVFVLYGELDVGFVTTANKLLSRTISQGDVFVFPRGL 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,732,904
Number of Sequences: 37544
Number of extensions: 129644
Number of successful extensions: 288
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)