Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I21
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    28   3.5  
U23519-4|AAK31501.1|  358|Caenorhabditis elegans Toxin-regulated...    27   6.2  
Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 98  FARRRPTCMYCLLHL*RHTSPSKYYCKHLISTCAST 205
           FA RRPTC  C +   + ++ +K   +   +TC+ T
Sbjct: 44  FASRRPTCCACWMRRKKESTTTKVCVQDDCTTCSCT 79


>U23519-4|AAK31501.1|  358|Caenorhabditis elegans Toxin-regulated
           target of p38mapkprotein 2 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 468 ALPPPPTIHGPFYTQYCVKVTVQCAY 391
           ALPP   ++G F T+Y +KVT+  A+
Sbjct: 284 ALPPNIHVNGLFKTEYSLKVTIGRAH 309


>Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical
           protein F38E11.4 protein.
          Length = 751

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -1

Query: 453 PTIHGPFYTQYCVKVTVQCAYKRRRPVGSESL*LAHR*TLDNMCSIAWCDNKCMCDVCVC 274
           P   G ++ +YC+   +QC       V +  +  A++ T+  + S   C ++CM D   C
Sbjct: 293 PLNSGEYFEKYCLPTNLQCIEASFELVANRMMTSAYK-TISAL-SQHECLSQCMNDGARC 350

Query: 273 VLFTHIY 253
              T+ Y
Sbjct: 351 SSATYFY 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,275,403
Number of Sequences: 27780
Number of extensions: 221706
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)