Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I18
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   1.00 
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    27   1.3  
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.0  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.3  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   9.3  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   9.3  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 266 LEDVTVKYCFELEKHIYPANSSLGYGCESHQLRTCDSIRQRTA 138
           +ED+ + Y ++  KH YPA+ S+ +G      R  D IR   A
Sbjct: 354 MEDLGIAYGYDNLKHTYPAH-SVTFGKPFEVNRLADIIRNEVA 395


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 418 LVSKYCLHNDHSESPVLHVIKNKHSGPIDVYV 323
           +VS++  HN H+    L+  K  HS P+ V +
Sbjct: 161 VVSEFLQHNGHNSQAELYASKWNHSAPVIVSI 192


>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 309 VQVPIT*TSMGPLCLF 356
           +Q PIT T MGP+CL+
Sbjct: 85  LQKPITCTPMGPICLW 100


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 463  NSLKVTIEVYT*KKKLVSKYCLHNDHSESP 374
            N LKVT++V+   +   + Y   N++ ESP
Sbjct: 2166 NFLKVTLQVFKSNEDTCNFYSYVNEYGESP 2195


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -3

Query: 193 TDASHISCVRATASANVPHSQIQPVLDKHFHWLALITVYPSN 68
           +DA   S ++   + N   + +QP+  K  +W  +  + P+N
Sbjct: 279 SDAMDDSKMKVDYTVNEISNAVQPIYSKPSYWKRIALITPAN 320


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = -2

Query: 263 EDVTVKYCFELEKHIYPANSSLGYGC----ESHQLRTCDSIR 150
           ED   +    L+ HIY  +   G GC     + Q ++CD  R
Sbjct: 285 EDANARDGAALDNHIYMDSMGFGMGCCCLQITFQAKSCDEAR 326


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 478 DFSLPNSLKVTIEVYT*KKKLVSKYCLHNDHSESPVLHVIKNKHSG 341
           D SLP  L V  ++    KK + ++ L +D  E PV+ V+   H G
Sbjct: 402 DVSLP--LPVLYDLVNDTKKRLIEFNLLDDTPEHPVIDVVGFGHMG 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,818
Number of Sequences: 5004
Number of extensions: 46221
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)