Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I18
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091...    47   8e-06
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773...    45   3e-05
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510...    44   8e-05
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632...    36   0.027
11_01_0408 - 3093026-3093189,3093460-3093524,3093686-3093966           28   4.1  
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557...    27   9.4  
10_01_0168 - 1883380-1883594,1884572-1888325                           27   9.4  

>10_08_0045 +
           14407892-14408068,14408759-14408815,14408899-14409125,
           14409271-14409400,14409848-14410051,14410127-14410198,
           14410468-14410608
          Length = 335

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +2

Query: 23  PLIVYPNSGEKYNP-QIGWIDRD--KCEPVEVFIQDWLDLGVRYVGGCCRT 166
           P+++YPNSGE Y+P +  W++      E    +++ W + G   +GGCCRT
Sbjct: 270 PILIYPNSGESYDPIRKEWVECSGISNEDFVSYVKKWHEAGASLIGGCCRT 320


>12_02_1048 +
           25675563-25675760,25676995-25677051,25677132-25677331,
           25677412-25677541,25677642-25677845,25678017-25678088,
           25678379-25678546
          Length = 342

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +2

Query: 23  PLIVYPNSGEKYNPQIG-WIDRDKCEPVEV--FIQDWLDLGVRYVGGCCRTYAADVTRIR 193
           P+++YPNSGE+Y+ +   W++       +   ++ +W   G   +GGCCRT    +  I 
Sbjct: 268 PILIYPNSGERYDAEKKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTPNTIKAIS 327

Query: 194 NQVN 205
             +N
Sbjct: 328 RSLN 331


>01_06_0875 -
           32650150-32650350,32650464-32650788,32650872-32651092,
           32651187-32651243,32651333-32651515
          Length = 328

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 23  PLIVYPNSGEKYNPQIG-WIDRDKCEPVEVFIQ---DWLDLGVRYVGGCCRTYAADVTRI 190
           P++VYPNSGE Y  +   W++ +       F+     W   G   VGGCCRT  A V  I
Sbjct: 243 PVVVYPNSGETYVAETKEWVESEGGASETDFVSCVGKWRQAGAALVGGCCRTSPATVRAI 302


>03_02_0194 +
           6322499-6322654,6323540-6323596,6323702-6323907,
           6324028-6324157,6324285-6324488,6324599-6324670,
           6324844-6325008
          Length = 329

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +2

Query: 26  LIVYPNSGEKYNPQIG-WIDRDKC---EPVEVFIQDWLDLGVRYVGGCCRTYAADVTRI 190
           + VYPNSGE ++ +   W+   +C   +  +   + W + G   VGGCCRT  + +  +
Sbjct: 257 IAVYPNSGEIWDGRAKRWLPA-QCFGHKSFDALAKRWQEAGASLVGGCCRTTPSTIRAV 314


>11_01_0408 - 3093026-3093189,3093460-3093524,3093686-3093966
          Length = 169

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 208 TVHLVTDASHISCVRATASANVPHSQIQPVLDKH 107
           T H++T A+H+  V  TA+A+     I+ + D H
Sbjct: 57  TAHIITPATHLHKVSVTATADDESLFIRMIYDSH 90


>11_01_0682 -
           5575297-5575308,5575391-5575516,5575779-5575885,
           5575911-5576013,5576122-5576187,5576378-5576461,
           5577448-5577522,5577615-5577668,5577752-5577895,
           5578632-5578685,5578877-5578981,5579076-5579173,
           5579660-5579729,5580444-5580566,5580647-5580727,
           5580996-5581476,5581684-5581816,5582550-5582598,
           5582704-5582892,5583642-5583703,5583762-5585316
          Length = 1256

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 196 VTDASHISCVRATASANVPHSQIQPVLDKHFHWL 95
           ++D+ H S  ++TA +N P    QP+ D+   W+
Sbjct: 752 ISDSGHRSR-QSTADSNEPSGDSQPIADQPIEWV 784


>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 266  LEDVTVKYCFELEKHIYPANSSLGYGCESHQLRTCDSIRQR 144
            L+D+T+KYC  +  ++ P    LG   +S ++R    +  R
Sbjct: 1209 LQDITIKYCPAI--NVKPLYERLGQRIDSLEIRELSDVHSR 1247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,875,810
Number of Sequences: 37544
Number of extensions: 278032
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)