Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I18
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL132877-10|CAB60850.1|  402|Caenorhabditis elegans Hypothetical...    27   8.4  

>Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 41  NSGEKYNPQIGWIDRDKCEPVEVFIQD-WL 127
           N G+K+N  I WI+R  C   ++   D WL
Sbjct: 105 NLGDKWNSSIEWINRVACPEEDLSCSDEWL 134


>Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 41  NSGEKYNPQIGWIDRDKCEPVEVFIQD-WL 127
           N G+K+N  I WI+R  C   ++   D WL
Sbjct: 105 NLGDKWNSSIEWINRVACPEEDLSCSDEWL 134


>AL132877-10|CAB60850.1|  402|Caenorhabditis elegans Hypothetical
           protein Y105E8B.4 protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 247 NIVLSSKNIFIPPTVHLVTDASHISCVRA--TASANVPHSQI 128
           N +   K++ I   + L+ DAS + C R   T S  +P +QI
Sbjct: 163 NSIRQDKSLVISCHIELIPDASKVPCKRVPITPSIEMPFAQI 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,130,749
Number of Sequences: 27780
Number of extensions: 250179
Number of successful extensions: 661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)