Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I17
         (231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   1.0  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   1.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   1.8  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    24   2.3  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    24   3.1  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    23   4.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   4.1  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    23   5.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    23   7.2  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    23   7.2  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    22   9.5  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    22   9.5  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    22   9.5  

>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 47  LCENPVIEMQFFFLTNVMYVHFMQF 121
           L  NP    Q FF+TN   ++F  F
Sbjct: 225 LSSNPTANGQVFFITNGQVIYFWDF 249


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 204 HLTVSHSKYYRMLILINYALRYRNTSRKN 118
           +LT S   YY   +  NY L  R+++R+N
Sbjct: 123 YLTDSFENYYLASLPTNYQLYQRDSNREN 151


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -3

Query: 169 VNINKLCPSIQK----HFKKELHEMYIHN 95
           ++ N  CP  +K    H  KELH++  HN
Sbjct: 196 ISTNSFCPYERKVQPEHVTKELHQLLQHN 224


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 141 YRNTSRKNCMKCTYITFVKKKN 76
           YR  S KN     YITFV+ +N
Sbjct: 308 YRKLSLKNLDYSKYITFVQDRN 329


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 52  RKSSYRDAIFFFNKCYVCTF 111
           R+  Y   IFF NKC  C F
Sbjct: 146 RRFPYDYKIFFPNKCSTCKF 165


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +2

Query: 74  QFFFLTNVMYVHFM 115
           QFF +TNV+++H++
Sbjct: 408 QFFPITNVLWLHYL 421


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 169 HPIILTVTHRKMLVIICGC 225
           H  + T+T R++L  +C C
Sbjct: 161 HSKVATITVRRLLEFVCSC 179


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 69  SITGFSHN*NKQDNLNVNFIL 7
           S  GFSHN N+ D     FIL
Sbjct: 211 SANGFSHNLNRYDISPAAFIL 231


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 169 VNINKLCPSIQKHFKKEL 116
           VNI  LC S+Q   +KE+
Sbjct: 428 VNIQALCMSLQSTLEKEI 445


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 108 ISCNSFLKCFCIEGHNLLILTSYNTYCDSP*DVS 209
           +S + FL  +  E H L ILT   +Y D+  +VS
Sbjct: 257 LSASEFL-AYQTEKHVLTILTDMTSYADALREVS 289


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 114 MKCTYITFVKKKNCISITGFSHN*NKQDNLNVNFI 10
           ++ T+  F   + C+SITG+       DN+N   I
Sbjct: 127 LRRTFGLFANVRPCVSITGYK---TPYDNVNTVLI 158


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 157 KLCPSIQKHFKKELHEMYIH 98
           K C S+ K   K+ HE Y +
Sbjct: 395 KFCQSVLKELLKKQHEAYAY 414


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 144 RYRNTSRKNCMKCTYITFVKKKN 76
           R +NT R+   +  +ITF+ ++N
Sbjct: 179 RLKNTKRRGTDEEDHITFINERN 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 906,197
Number of Sequences: 5004
Number of extensions: 15942
Number of successful extensions: 40
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)