Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I17
         (231 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0582 + 9624481-9626844                                           29   0.53 
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15...    26   3.7  
05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448...    26   3.7  
03_05_0894 + 28571015-28571391,28571651-28571768,28572069-285723...    26   3.7  
02_02_0010 - 6077666-6077756,6078017-6078108                           25   6.5  

>03_02_0582 + 9624481-9626844
          Length = 787

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 69  RCNFFF*QMLCMYISCNSFLKCFCIEGHNLLILTSYNTY 185
           R  FF   M  MY +C+  L  F  E +  L  T+YN Y
Sbjct: 532 RLGFFAIAMSTMYYTCSDALPVFLSERYIFLRETAYNAY 570


>10_01_0013 +
           154098-154101,154513-154673,154773-154847,155071-155571,
           155873-156214,158107-158234,158296-158342,160117-160196,
           160569-160654,161409-161556,161947-162082,162160-162488,
           162953-163169,164547-164572
          Length = 759

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 117 NSFLKC-FCIEGHNLLILTSYNT-YCD 191
           N  L C FCI+ HN L    Y T YCD
Sbjct: 389 NIKLYCSFCIQNHNFLSPYMYGTSYCD 415


>05_07_0027 +
           27140626-27141457,27143101-27143901,27144838-27144873,
           27145133-27145420,27145836-27146289,27146520-27146964
          Length = 951

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 99  CMYISCNSFLKCFCIEGH 152
           C Y + N FL C C +GH
Sbjct: 254 CSYGTKNEFLGCLCSDGH 271


>03_05_0894 +
           28571015-28571391,28571651-28571768,28572069-28572376,
           28572452-28572583,28572672-28572770,28572950-28573487
          Length = 523

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 120 NCMKCTYITFVKKKNCISITG 58
           NC KC ++ F K   C+   G
Sbjct: 265 NCPKCNFLNFAKNIKCLRCNG 285


>02_02_0010 - 6077666-6077756,6078017-6078108
          Length = 60

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 63  LSRCNFFF*QMLCMYISCNSFLKCFC 140
           L  C F      C Y +C   L+CFC
Sbjct: 28  LYACLFMLCCCFCCYETCEHCLECFC 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,015,276
Number of Sequences: 37544
Number of extensions: 78989
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)