Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I17
(231 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41274-6|AAA82462.1| 601|Caenorhabditis elegans Hypothetical pr... 28 0.77
U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical pr... 28 1.0
AC006614-1|AAF39762.2| 472|Caenorhabditis elegans Hypothetical ... 26 3.1
U80028-10|AAN73868.2| 376|Caenorhabditis elegans Serpentine rec... 25 5.5
AF098986-4|AAY86227.1| 129|Caenorhabditis elegans Hypothetical ... 25 5.5
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 25 7.2
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 25 7.2
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 25 7.2
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 25 7.2
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 25 7.2
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 25 7.2
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 25 7.2
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 25 7.2
AF077537-14|AAC26283.1| 556|Caenorhabditis elegans Hypothetical... 25 7.2
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 25 9.5
AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h at... 25 9.5
AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein... 25 9.5
>U41274-6|AAA82462.1| 601|Caenorhabditis elegans Hypothetical
protein T04G9.6 protein.
Length = 601
Score = 28.3 bits (60), Expect = 0.77
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 117 CMKCTYITFVKKKNCISIT 61
C+K TY+ +KKNC+ I+
Sbjct: 555 CIKLTYLNLTRKKNCLLIS 573
>U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical
protein F47C10.3 protein.
Length = 370
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +3
Query: 39 CFNYAKIQLSRCNFFF*QMLCMYISCNSFLKCFCIEGHNLLILTSYNTYC 188
C+NY + + C FF ++ +I+ N C +G + + +T C
Sbjct: 41 CYNYGVLSCNACKMFFRRVEVDHITYNCKYWNTCYDGQEYVDANNVSTRC 90
>AC006614-1|AAF39762.2| 472|Caenorhabditis elegans Hypothetical
protein C34H3.1 protein.
Length = 472
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 120 NCMKCTYITFVKKKNCISITGFSHN*NKQDNLN 22
NC+ CT +K+ C+ I GF H+ Q +N
Sbjct: 194 NCL-CTPKDSLKEDGCLKIPGFDHDCTVQQFVN 225
>U80028-10|AAN73868.2| 376|Caenorhabditis elegans Serpentine
receptor, class w protein139 protein.
Length = 376
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 31 ILFVLIMRKSSYRDAIFFFNKCYVCTFHAILS*SVSV 141
I +LI + +D I +FN CY T +A + + SV
Sbjct: 83 ICTLLIEIEQIIQDLIIYFNNCYQATSYAWILFNTSV 119
>AF098986-4|AAY86227.1| 129|Caenorhabditis elegans Hypothetical
protein C36C9.6 protein.
Length = 129
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 157 KLCPSIQKHFKKELHEM 107
+ CPS KH KEL EM
Sbjct: 27 RFCPSFTKHLVKELVEM 43
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 138 RNTSRKNCMKCTYITFVKKKNCISITGFSHN 46
R+ S + C ++TF +K+ I G HN
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHN 118
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 60 QLSRCNFFF*QMLCMYISCNSFLKC 134
Q RCN F Q L Y+ C +F C
Sbjct: 329 QQVRCNSFNCQCLAGYVQCAAFTCC 353
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 138 RNTSRKNCMKCTYITFVKKKNCISITGFSHN 46
R+ S + C ++TF +K+ I G HN
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHN 118
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 138 RNTSRKNCMKCTYITFVKKKNCISITGFSHN 46
R+ S + C ++TF +K+ I G HN
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHN 118
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 138 RNTSRKNCMKCTYITFVKKKNCISITGFSHN 46
R+ S + C ++TF +K+ I G HN
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHN 118
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 138 RNTSRKNCMKCTYITFVKKKNCISITGFSHN 46
R+ S + C ++TF +K+ I G HN
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHN 118
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 138 RNTSRKNCMKCTYITFVKKKNCISITGFSHN 46
R+ S + C ++TF +K+ I G HN
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHN 118
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 138 RNTSRKNCMKCTYITFVKKKNCISITGFSHN 46
R+ S + C ++TF +K+ I G HN
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHN 118
>AF077537-14|AAC26283.1| 556|Caenorhabditis elegans Hypothetical
protein F16G10.15 protein.
Length = 556
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 120 NCMKCTYITFVKKKNCISITGF 55
N +K YIT+ K++N + I GF
Sbjct: 151 NTLKDLYITYRKEENQLEIVGF 172
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 201 LTVSHSKYYRMLILINYALRYRNTSRKNCMK 109
LT +H + Y+M+I + + + S CMK
Sbjct: 331 LTAAHGQNYKMIIFVKSKVMADHLSSDFCMK 361
>AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoforma protein.
Length = 384
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 139 QKHFKKELHEMYIH 98
QK ++ELH++YIH
Sbjct: 330 QKKLRQELHKLYIH 343
>AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein
protein.
Length = 384
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 139 QKHFKKELHEMYIH 98
QK ++ELH++YIH
Sbjct: 330 QKKLRQELHKLYIH 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,036,818
Number of Sequences: 27780
Number of extensions: 93489
Number of successful extensions: 254
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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