Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I15
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 153 2e-38
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 56 2e-09
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 55 5e-09
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 29 0.52
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 1.2
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 1.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 1.6
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 2.8
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 3.7
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 4.9
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 6.5
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 8.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 8.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 153 bits (370), Expect = 2e-38
Identities = 69/138 (50%), Positives = 96/138 (69%)
Frame = -1
Query: 498 KKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCI 319
K + K+P ++ G N V L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY I
Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAI 179
Query: 318 VKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLG 139
VK K+RLG ++H+KT +A+T V D+ + +V A+ NF+ +Y+E RR WGGG++G
Sbjct: 180 VKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMG 239
Query: 138 NKSNARIAKLEKAKAREI 85
K+ A +AK KA A +
Sbjct: 240 GKTQALLAKRAKAAAATV 257
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 56.4 bits (130), Expect = 2e-09
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = -1
Query: 462 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALV 286
LR G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG A
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACG 91
Query: 285 HRKTCTSVALTNVESGD 235
+ S ++T E+ D
Sbjct: 92 VSRPVISASITTNEASD 108
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 55.2 bits (127), Expect = 5e-09
Identities = 35/103 (33%), Positives = 51/103 (49%)
Frame = -1
Query: 477 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 298
K+ + LR G V K V K + LV++A D+ P++++ +P LC VPY K L
Sbjct: 50 KQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELL 108
Query: 297 GALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEEL 169
G + K TS + V G + SKV E + E YEE+
Sbjct: 109 GEASNTKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEI 145
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 28.7 bits (61), Expect = 0.52
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 86 ISRAFAFSSLAIRAFD-LLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRA 262
+S+ A SS A D L RT PP L + SL + F + A SPD +
Sbjct: 258 VSKHEALSSTANIVKDGSLERTEPPNSLNSKISYSLYCNETLVSFFRRPAFSPDGLLL-V 316
Query: 263 TLVQVLRCTSAPNRDLPFT 319
T LR PN ++P+T
Sbjct: 317 TPAGRLRPHGQPNFEVPYT 335
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 81 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 182
++ H PSP A +Y T Y G V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 81 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 182
++ H PSP A +Y T Y G V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +2
Query: 206 ASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPILRQSAGRKSTSSIGS 385
++T++ + ST ++L+ V ++ T +Q + KS+ +G
Sbjct: 587 SNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSEFVGQ 646
Query: 386 TS*AMTTSCAFFFSTSLVT 442
T+ TTS + F+T+L T
Sbjct: 647 TTTEYTTSGSVGFTTTLAT 665
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 196 QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 104
Q++ L R+ Q +G + R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 2.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 152 PPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFT 319
P Q + +SS S V + S++ + S DST + +T + T P P T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 222 SKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIA 82
+K+ EA K FNE E+L GGG L K+ A+L+ + + A
Sbjct: 23 AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAA 68
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 299 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 385
+ +LPF P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 317 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 457
T+ I+ +AG + T+S+GS+S A T + A ST V +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 214 YLREGGTVSRLHICKSD---ARASLTVYKRTQS*FTLHDTVRDSHLTAKRWQEEHKF 375
++++ G S L C++ +S T + + S F HDT S+ QE+H +
Sbjct: 595 FVKKIGCQSELFNCENSDWTKVSSSTAFHLSNSLFETHDTTGTSNFAVSIQQEKHYY 651
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 362 SCQR-FAVRWESRTVS*RVNHDWVRLYTVRL 273
SC++ F+ WES H WVRL RL
Sbjct: 2232 SCEKEFSKIWESMRYLILFKHAWVRLSVSRL 2262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,890
Number of Sequences: 5004
Number of extensions: 35540
Number of successful extensions: 111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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