Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I15
(504 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 239 1e-63
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 239 1e-63
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 239 1e-63
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 239 1e-63
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 239 1e-63
AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi p... 60 2e-09
AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA... 60 2e-09
BT023752-1|AAZ41760.1| 160|Drosophila melanogaster RH66170p pro... 48 5e-06
AF217228-1|AAF27630.1| 160|Drosophila melanogaster nucleolar pr... 48 5e-06
AE014296-2434|AAF49701.1| 160|Drosophila melanogaster CG5258-PA... 48 5e-06
M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal degene... 32 0.38
BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p pro... 32 0.38
AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA... 32 0.38
AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD... 32 0.38
AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC... 32 0.38
AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB... 32 0.38
AY122076-1|AAM52588.1| 921|Drosophila melanogaster AT18175p pro... 31 0.67
AE014297-3108|AAF55959.3| 1364|Drosophila melanogaster CG5732-PA... 31 0.67
X89659-1|CAA61806.1| 151|Drosophila melanogaster 40S ribosomal ... 29 3.6
AY058531-1|AAL13760.1| 139|Drosophila melanogaster LD23808p pro... 29 3.6
AE014296-2235|AAN11844.2| 139|Drosophila melanogaster CG11271-P... 29 3.6
AE014296-2234|AAN11845.1| 139|Drosophila melanogaster CG11271-P... 29 3.6
AY122171-1|AAM52683.1| 1653|Drosophila melanogaster LD29171p pro... 29 4.7
AE014134-2399|AAN10848.1| 1614|Drosophila melanogaster CG7578-PB... 29 4.7
AE014134-2398|AAF53331.2| 1653|Drosophila melanogaster CG7578-PA... 29 4.7
AY119087-1|AAM50947.1| 704|Drosophila melanogaster LP11564p pro... 28 8.3
AE014134-1105|AAF52394.3| 704|Drosophila melanogaster CG31638-P... 28 8.3
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 239 bits (586), Expect = 1e-63
Identities = 109/142 (76%), Positives = 130/142 (91%)
Frame = -1
Query: 495 KDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 316
KD P K+P+ + AGTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 130 KDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGN 136
KGK+RLG LV RKTCT++ALT V++ D+A F KV+EA+KTNFNER+EE+RRHWGGG+LG+
Sbjct: 190 KGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGS 249
Query: 135 KSNARIAKLEKAKAREIAQKQG 70
KS ARI+KLE+AKARE+AQKQG
Sbjct: 250 KSLARISKLERAKARELAQKQG 271
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 239 bits (586), Expect = 1e-63
Identities = 109/142 (76%), Positives = 130/142 (91%)
Frame = -1
Query: 495 KDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 316
KD P K+P+ + AGTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 130 KDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGN 136
KGK+RLG LV RKTCT++ALT V++ D+A F KV+EA+KTNFNER+EE+RRHWGGG+LG+
Sbjct: 190 KGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGS 249
Query: 135 KSNARIAKLEKAKAREIAQKQG 70
KS ARI+KLE+AKARE+AQKQG
Sbjct: 250 KSLARISKLERAKARELAQKQG 271
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 239 bits (586), Expect = 1e-63
Identities = 109/142 (76%), Positives = 130/142 (91%)
Frame = -1
Query: 495 KDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 316
KD P K+P+ + AGTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 130 KDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGN 136
KGK+RLG LV RKTCT++ALT V++ D+A F KV+EA+KTNFNER+EE+RRHWGGG+LG+
Sbjct: 190 KGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGS 249
Query: 135 KSNARIAKLEKAKAREIAQKQG 70
KS ARI+KLE+AKARE+AQKQG
Sbjct: 250 KSLARISKLERAKARELAQKQG 271
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 239 bits (586), Expect = 1e-63
Identities = 109/142 (76%), Positives = 130/142 (91%)
Frame = -1
Query: 495 KDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 316
KD P K+P+ + AGTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 130 KDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGN 136
KGK+RLG LV RKTCT++ALT V++ D+A F KV+EA+KTNFNER+EE+RRHWGGG+LG+
Sbjct: 190 KGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGS 249
Query: 135 KSNARIAKLEKAKAREIAQKQG 70
KS ARI+KLE+AKARE+AQKQG
Sbjct: 250 KSLARISKLERAKARELAQKQG 271
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 239 bits (586), Expect = 1e-63
Identities = 109/142 (76%), Positives = 130/142 (91%)
Frame = -1
Query: 495 KDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 316
KD P K+P+ + AGTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIV
Sbjct: 130 KDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 189
Query: 315 KGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGN 136
KGK+RLG LV RKTCT++ALT V++ D+A F KV+EA+KTNFNER+EE+RRHWGGG+LG+
Sbjct: 190 KGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGS 249
Query: 135 KSNARIAKLEKAKAREIAQKQG 70
KS ARI+KLE+AKARE+AQKQG
Sbjct: 250 KSLARISKLERAKARELAQKQG 271
>AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi
protein.
Length = 127
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -1
Query: 468 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 289
N LR G N TK + + A +VV+A D +PIE++L LP LC VPY V+ K LG
Sbjct: 32 NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRA 91
Query: 288 --VHRKTCTSVALTNVESGDRAAFSKVVEAIK 199
V R TN S ++ + + + I+
Sbjct: 92 CGVSRPIVACSVTTNEGSQLKSQITSIQQEIE 123
>AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA
protein.
Length = 127
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -1
Query: 468 NTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 289
N LR G N TK + + A +VV+A D +PIE++L LP LC VPY V+ K LG
Sbjct: 32 NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRA 91
Query: 288 --VHRKTCTSVALTNVESGDRAAFSKVVEAIK 199
V R TN S ++ + + + I+
Sbjct: 92 CGVSRPIVACSVTTNEGSQLKSQITSIQQEIE 123
>BT023752-1|AAZ41760.1| 160|Drosophila melanogaster RH66170p
protein.
Length = 160
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = -1
Query: 477 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 298
K LR G V + K + + + A DV P++++ LPA+C + G+PY ++ L
Sbjct: 62 KHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADL 121
Query: 297 GALVHRKTCTSVALTNVESGDRAAFSKVVEAI 202
GA + K T L + + +V E +
Sbjct: 122 GAAMGVKRGTVALLVRQNEEYKDLYDEVKEEL 153
>AF217228-1|AAF27630.1| 160|Drosophila melanogaster nucleolar
protein NHP2 protein.
Length = 160
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = -1
Query: 477 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 298
K LR G V + K + + + A DV P++++ LPA+C + G+PY ++ L
Sbjct: 62 KHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADL 121
Query: 297 GALVHRKTCTSVALTNVESGDRAAFSKVVEAI 202
GA + K T L + + +V E +
Sbjct: 122 GAAMGVKRGTVALLVRQNEEYKDLYDEVKEEL 153
>AE014296-2434|AAF49701.1| 160|Drosophila melanogaster CG5258-PA
protein.
Length = 160
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = -1
Query: 477 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 298
K LR G V + K + + + A DV P++++ LPA+C + G+PY ++ L
Sbjct: 62 KHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADL 121
Query: 297 GALVHRKTCTSVALTNVESGDRAAFSKVVEAI 202
GA + K T L + + +V E +
Sbjct: 122 GAAMGVKRGTVALLVRQNEEYKDLYDEVKEEL 153
>M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal
degeneration C protein protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 474 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 373
RP+ + T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p
protein.
Length = 603
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 474 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 373
RP+ + T+ VT L +K +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592
>AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA,
isoform A protein.
Length = 603
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 474 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 373
RP+ + T+ VT L +K +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592
>AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD,
isoform D protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 474 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 373
RP+ + T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC,
isoform C protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 474 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 373
RP+ + T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB,
isoform B protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 474 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 373
RP+ + T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AY122076-1|AAM52588.1| 921|Drosophila melanogaster AT18175p
protein.
Length = 921
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 78 SVLSHAPSPSPAWRYARSTCYRGRH 152
+ L +AP S WRY R +RGRH
Sbjct: 327 ATLGNAPQVSSTWRYGRPGTHRGRH 351
>AE014297-3108|AAF55959.3| 1364|Drosophila melanogaster CG5732-PA
protein.
Length = 1364
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 78 SVLSHAPSPSPAWRYARSTCYRGRH 152
+ L +AP S WRY R +RGRH
Sbjct: 327 ATLGNAPQVSSTWRYGRPGTHRGRH 351
>X89659-1|CAA61806.1| 151|Drosophila melanogaster 40S ribosomal
protein S12 protein.
Length = 151
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 453 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 295
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 53 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 105
>AY058531-1|AAL13760.1| 139|Drosophila melanogaster LD23808p
protein.
Length = 139
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 453 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 295
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
>AE014296-2235|AAN11844.2| 139|Drosophila melanogaster CG11271-PC,
isoform C protein.
Length = 139
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 453 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 295
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
>AE014296-2234|AAN11845.1| 139|Drosophila melanogaster CG11271-PB,
isoform B protein.
Length = 139
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 453 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 295
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
>AY122171-1|AAM52683.1| 1653|Drosophila melanogaster LD29171p protein.
Length = 1653
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 229 GTVSRLHICKSDARASLTVYKRTQS*FTLHDTVRDSHLTAKRWQEEH 369
G+ S+L C+ + + + Y RT+ TL D + SH AKR+ +H
Sbjct: 1468 GSQSQLLECQREEQG-MYGYLRTRQLLTLADCLMQSHRFAKRFNADH 1513
>AE014134-2399|AAN10848.1| 1614|Drosophila melanogaster CG7578-PB,
isoform B protein.
Length = 1614
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 229 GTVSRLHICKSDARASLTVYKRTQS*FTLHDTVRDSHLTAKRWQEEH 369
G+ S+L C+ + + + Y RT+ TL D + SH AKR+ +H
Sbjct: 1468 GSQSQLLECQREEQG-MYGYLRTRQLLTLADCLMQSHRFAKRFNADH 1513
>AE014134-2398|AAF53331.2| 1653|Drosophila melanogaster CG7578-PA,
isoform A protein.
Length = 1653
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 229 GTVSRLHICKSDARASLTVYKRTQS*FTLHDTVRDSHLTAKRWQEEH 369
G+ S+L C+ + + + Y RT+ TL D + SH AKR+ +H
Sbjct: 1468 GSQSQLLECQREEQG-MYGYLRTRQLLTLADCLMQSHRFAKRFNADH 1513
>AY119087-1|AAM50947.1| 704|Drosophila melanogaster LP11564p
protein.
Length = 704
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -1
Query: 285 HRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGG--VLGNKSNARIAK 112
H K +A TN E G ++ EA +R EEL+R G L + N ++ +
Sbjct: 411 HAKLKKLLAETNTELGHAVRRAEQYEAEVKRLRQRVEELKRELAGAEDELDSAVN-QVRR 469
Query: 111 LEKAKAREIAQKQG 70
L+++ + Q +G
Sbjct: 470 LQRSNDELVGQTEG 483
>AE014134-1105|AAF52394.3| 704|Drosophila melanogaster CG31638-PA
protein.
Length = 704
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -1
Query: 285 HRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGG--VLGNKSNARIAK 112
H K +A TN E G ++ EA +R EEL+R G L + N ++ +
Sbjct: 411 HAKLKKLLAETNTELGHAVRRAEQYEAEVKRLRQRVEELKRELAGAEDELDSAVN-QVRR 469
Query: 111 LEKAKAREIAQKQG 70
L+++ + Q +G
Sbjct: 470 LQRSNDELVGQTEG 483
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,170,203
Number of Sequences: 53049
Number of extensions: 435213
Number of successful extensions: 1182
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -