Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I15
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   179   1e-45
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   176   9e-45
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    55   3e-08
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    49   2e-06
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    31   0.36 
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  179 bits (435), Expect = 1e-45
 Identities = 79/141 (56%), Positives = 111/141 (78%)
 Frame = -1

Query: 501 AKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYC 322
           A K E   KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY 
Sbjct: 124 AGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYA 183

Query: 321 IVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVL 142
           I+KGK+ LG +V RKT  +VAL +V   D++A +K+VE +  NF+ER+EE+R+HWGGGV+
Sbjct: 184 IIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVM 243

Query: 141 GNKSNARIAKLEKAKAREIAQ 79
             KS+A+  K+E+A+AR++ +
Sbjct: 244 SAKSDAKKLKIERARARDLGK 264


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  176 bits (428), Expect = 9e-45
 Identities = 76/133 (57%), Positives = 108/133 (81%)
 Frame = -1

Query: 477 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 298
           KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ L
Sbjct: 112 KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASL 171

Query: 297 GALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARI 118
           G +V RKT  +VAL +V   D++A +K+VE +  NF+ER+EE+R+HWGGGV+  KS+A+ 
Sbjct: 172 GTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKK 231

Query: 117 AKLEKAKAREIAQ 79
            K+E+A+AR++ +
Sbjct: 232 LKIERARARDLGK 244


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = -1

Query: 462 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 289
           L+ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94

Query: 288 VHRKTCTSVALTNVESGDRAAFSKVVEAIK 199
           V R    +    N  S  ++   K+ E ++
Sbjct: 95  VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = -1

Query: 465 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 289
           TLR G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG A+
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 288 VHRKTCTSVALTNVESGD-RAAFSKVVEAIK 199
            HR+   S+ +    SGD +  + +V EA++
Sbjct: 128 GHRR--PSILIFVKPSGDFKELYDEVAEALR 156


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 200 LIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPI 340
           L+  T  E A +S D  F     V V   TS+PN+D P T+Q+  P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 279 YGVQAHPIVIYPSRYSTGLPS 341
           YGV+A P+V YP+  STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,545,817
Number of Sequences: 27780
Number of extensions: 211704
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)