Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I14
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    29   0.39 
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    29   0.68 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   3.6  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -3

Query: 532 LTVASPIPVIIFKTTLISLKSKVLFIIACMSSISPLKNFPLAVTSTLCKCCGESFFGNGV 353
           LT+ S   V+ +K+TL +L+S    +I   ++  PL+   L   + L +C    + GN +
Sbjct: 30  LTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNI 89


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 291 GILGDAVVKYLLEAGHEV 344
           G +G  +V+ LLEAGHEV
Sbjct: 10  GFIGSEIVRQLLEAGHEV 27


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 169 KQTIKREWSVLIGWLLELYL 228
           K T+K + S+L+ WLLEL L
Sbjct: 461 KSTMKIQKSLLVNWLLELML 480


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 404 NGQWKILQWRY 436
           NG+WKIL W++
Sbjct: 98  NGEWKILLWKF 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,311
Number of Sequences: 5004
Number of extensions: 53329
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)