Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I14
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116...    28   4.9  
04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061     27   8.5  
01_06_1522 - 37962431-37963060,37963216-37963542                       27   8.5  

>09_01_0079 -
           1159963-1160211,1160303-1160509,1160631-1160801,
           1161732-1161869,1162184-1162273,1162354-1162431,
           1162510-1163166,1163245-1163363,1164305-1164584
          Length = 662

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 280 PGTGKITRILYASQDQSVNKAPTAN 206
           P  GK  RI+Y+++D S+ K+ TAN
Sbjct: 105 PINGKPIRIMYSNRDPSLRKSGTAN 129


>04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061
          Length = 346

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = -2

Query: 203 IKTDHSLLIVCFLFFLINIFYYKNTCKTLNLYINTGNTL*FLD 75
           I  ++ +L+ C++  + ++   K  C+ + L+ +  +T  FLD
Sbjct: 23  IAINYGILVACWMLHMFDVVQSKLICRAMALHFSWRSTSPFLD 65


>01_06_1522 - 37962431-37963060,37963216-37963542
          Length = 318

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 208 WLLELYLHFGLATHTRFW*SSPCLAGAMVYWAMQLSSIS*KLVMR 342
           W   L +  GLA   R+  ++ C A AM  W    S +S + VMR
Sbjct: 68  WEACLAVKVGLAAVERYCAAASCAAAAMDDWLQDPSPLSTRQVMR 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,791
Number of Sequences: 37544
Number of extensions: 322901
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)