Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I13
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 177 8e-45
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 176 1e-44
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 161 6e-40
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 145 2e-35
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 59 3e-09
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 40 0.001
07_03_0588 - 19715677-19715754,19715843-19715942,19716170-197162... 29 2.3
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 29 2.3
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 3.1
01_05_0393 - 21732178-21732287,21732875-21733436 29 4.1
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 28 5.4
02_05_0718 + 31203358-31203717,31203826-31204011 28 7.1
01_06_1099 + 34525714-34526775 28 7.1
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 27 9.4
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 177 bits (430), Expect = 8e-45
Identities = 83/139 (59%), Positives = 98/139 (70%), Gaps = 2/139 (1%)
Frame = +3
Query: 57 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 230
KAV VL V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC S G
Sbjct: 121 KAVVVLGSSEIVKGTIHFVQEGDG-PTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGP 179
Query: 231 HFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHA 410
H+NP +EHGAP+ +TRH GDLGN+ A D GV + + DSQI L GPNSI+GR +VVHA
Sbjct: 180 HYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGRAVVVHA 238
Query: 411 DPDDLGLGGHELSKSTGNA 467
DPDDLG GGHELSK+TGNA
Sbjct: 239 DPDDLGKGGHELSKTTGNA 257
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 176 bits (428), Expect = 1e-44
Identities = 85/139 (61%), Positives = 97/139 (69%), Gaps = 2/139 (1%)
Frame = +3
Query: 57 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 230
KAV VL V GT+FF Q+ + P V+G V GL G HGFHVH GD TNGC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDG-PTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 231 HFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHA 410
HFNP +EHGAP + RH GDLGNI A +D GV V + DSQI L G +SI+GR +VVHA
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHA 120
Query: 411 DPDDLGLGGHELSKSTGNA 467
DPDDLG GGHELSK+TGNA
Sbjct: 121 DPDDLGKGGHELSKTTGNA 139
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 161 bits (390), Expect = 6e-40
Identities = 81/139 (58%), Positives = 92/139 (66%), Gaps = 2/139 (1%)
Frame = +3
Query: 57 KAVCVLHG--DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 230
KAV VL G V G V Q D+ P V+ V GL+ G HGFH+HEFGD TNGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 231 HFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHA 410
HFNP HGAP+ + RH GDLGNI A+++ GV + I D QI L GPNS+VGR VVH
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVANAE-GVAEATIVDKQIPLSGPNSVVGRAFVVHE 170
Query: 411 DPDDLGLGGHELSKSTGNA 467
DDLG GGHELS STGNA
Sbjct: 171 LEDDLGKGGHELSLSTGNA 189
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 145 bits (352), Expect = 2e-35
Identities = 67/117 (57%), Positives = 80/117 (68%)
Frame = +3
Query: 84 VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGA 263
V+G + F Q + V G V GL+ G HGFH+H FGD TNGC S G HFNP + HGA
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 264 PDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLG 434
P D RH+GDLGNI A+ D GV + I+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 83 PSDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Frame = +3
Query: 132 VVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRHIGDLGNIEA 311
+V GLS GKHG+ ++EFGD T G S G +NP P +GDLG +EA
Sbjct: 191 IVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEA 244
Query: 312 SSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHA--DPDDLGLGGHELSKSTG 461
+ G + ++ +V ++GR++ ++A D D G+ +++S G
Sbjct: 245 -GEKGEAQFSASKEKLKVV---DLIGRSIALYATEDRSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +3
Query: 120 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAG 227
SS + V V GL HGFHVH G TNGC G
Sbjct: 34 SSLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>07_03_0588 -
19715677-19715754,19715843-19715942,19716170-19716297,
19716385-19716552,19716623-19716735,19716820-19716972,
19717082-19717225,19718710-19719427
Length = 533
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +3
Query: 258 GAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDL 425
G P D R + LG GVT +C + + SI R LV AD +D+
Sbjct: 75 GKPYDDVRSVYSLGKELGRGQFGVTYLCTEIASGKQYACKSISKRKLVSKADKEDI 130
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 198 DNTNGCTSAGAHFNPLKQEHGAPDSDTRHIGDLGNIEASS 317
D TS GAH +PL+ H +P S + + A+S
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSSSSATS 54
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 369 GPNSIVGRTLVVHADPDDLGLGG 437
GP + VGR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>01_05_0393 - 21732178-21732287,21732875-21733436
Length = 223
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +3
Query: 180 HVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQI 359
H H GD S+ + H D GD G+I + SD VC + +
Sbjct: 19 HSHAIGDMPQPDASSRTSADEDDHGHNVGIDDIDDAGDNGSIGSDSDVPSCAVCTEPLEW 78
Query: 360 SLVGP 374
+ VGP
Sbjct: 79 AAVGP 83
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +3
Query: 378 SIVGRTLVVHADPDDLGLGGHELSKSTGNAVSPYCLRCHRISQD 509
SIVG+T P L LG H S STG A P+ + SQD
Sbjct: 21 SIVGQTNPSTYPP--LALGHHSWSSSTGAATVPWSYPVNNQSQD 62
>02_05_0718 + 31203358-31203717,31203826-31204011
Length = 181
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 411 DPDDLGLGGHELSKSTGNAVSPYCLRCHRISQDLSFSSS 527
DP G GG++++ + G A+ P CH IS S SSS
Sbjct: 22 DPTPYG-GGYDIALTFGRALPPSDEICHPISTASSSSSS 59
>01_06_1099 + 34525714-34526775
Length = 353
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 357 ISLVGPNSIVGRTLVVHADPDDLGLGGHELSKSTGNAVS 473
+ L G ++ G TLVV +D G GGH K T VS
Sbjct: 288 LELPGGMTLQGATLVVIKPSNDGGSGGHSSRKETEAFVS 326
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 132 VVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRH 284
++S VK +GK G ++H GC G + + H AP + H
Sbjct: 488 LISNAVKFTHEGKVGINLHVLDKQLPGCRIEGGQLH--SKAHSAPAAAAEH 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,112
Number of Sequences: 37544
Number of extensions: 363565
Number of successful extensions: 973
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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