Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I13
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 170 6e-43
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 170 6e-43
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 170 6e-43
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 170 6e-43
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 159 2e-39
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 145 2e-35
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 145 2e-35
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 145 2e-35
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81070-9|CAB03002.1| 132|Caenorhabditis elegans Hypothetical pr... 29 3.7
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 170 bits (414), Expect = 6e-43
Identities = 79/144 (54%), Positives = 105/144 (72%), Gaps = 4/144 (2%)
Frame = +3
Query: 48 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 224
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 225 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 404
G HFNP + HG P S+ RH+GDLGN+EA +D GV K+ + D+ ++L GPN++VGR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 405 HADPDDLGLG---GHELSKSTGNA 467
HA DDLG G E SK TGNA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNA 143
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 170 bits (414), Expect = 6e-43
Identities = 79/144 (54%), Positives = 105/144 (72%), Gaps = 4/144 (2%)
Frame = +3
Query: 48 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 224
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 225 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 404
G HFNP + HG P S+ RH+GDLGN+EA +D GV K+ + D+ ++L GPN++VGR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 405 HADPDDLGLG---GHELSKSTGNA 467
HA DDLG G E SK TGNA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNA 143
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 170 bits (414), Expect = 6e-43
Identities = 79/144 (54%), Positives = 105/144 (72%), Gaps = 4/144 (2%)
Frame = +3
Query: 48 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 224
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 225 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 404
G HFNP + HG P S+ RH+GDLGN+EA +D GV K+ + D+ ++L GPN++VGR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 405 HADPDDLGLG---GHELSKSTGNA 467
HA DDLG G E SK TGNA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNA 143
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 170 bits (414), Expect = 6e-43
Identities = 79/144 (54%), Positives = 105/144 (72%), Gaps = 4/144 (2%)
Frame = +3
Query: 48 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 224
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 82
Query: 225 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 404
G HFNP + HG P S+ RH+GDLGN+EA +D GV K+ + D+ ++L GPN++VGR++VV
Sbjct: 83 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 141
Query: 405 HADPDDLGLG---GHELSKSTGNA 467
HA DDLG G E SK TGNA
Sbjct: 142 HAGQDDLGEGVGDKAEESKKTGNA 165
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 159 bits (385), Expect = 2e-39
Identities = 77/141 (54%), Positives = 95/141 (67%), Gaps = 4/141 (2%)
Frame = +3
Query: 57 KAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAH 233
+AV VL G V GTV+ QK E GE+KGLS G HGFH+H++GD+T+GCTSAG H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 234 FNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHAD 413
FNP K HG DS RH+GDLGN+EA +D GV K+ D +SL G N+++GR++VVH D
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGAD-GVAKIKFSDKVVSLFGANTVIGRSMVVHVD 142
Query: 414 PDDLGLG---GHELSKSTGNA 467
DDLG G E S TGNA
Sbjct: 143 RDDLGQGIDDKAEESLKTGNA 163
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 145 bits (352), Expect = 2e-35
Identities = 70/131 (53%), Positives = 89/131 (67%)
Frame = +3
Query: 81 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 260
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 261 APDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGH 440
APD RHIGDLGNIE+ + G T + + DS SL G SI+GR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 441 ELSKSTGNAVS 473
+ SK+TGNA S
Sbjct: 156 DQSKTTGNAGS 166
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 145 bits (352), Expect = 2e-35
Identities = 70/131 (53%), Positives = 89/131 (67%)
Frame = +3
Query: 81 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 260
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 261 APDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGH 440
APD RHIGDLGNIE+ + G T + + DS SL G SI+GR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 441 ELSKSTGNAVS 473
+ SK+TGNA S
Sbjct: 156 DQSKTTGNAGS 166
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 145 bits (352), Expect = 2e-35
Identities = 70/131 (53%), Positives = 89/131 (67%)
Frame = +3
Query: 81 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 260
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 261 APDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGH 440
APD RHIGDLGNIE+ + G T + + DS SL G SI+GR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 441 ELSKSTGNAVS 473
+ SK+TGNA S
Sbjct: 156 DQSKTTGNAGS 166
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 120 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFN 239
S+ + + GEV L G+H +H+FGD++ GC+ GA F+
Sbjct: 906 STALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 120 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFN 239
S+ + + GEV L G+H +H+FGD++ GC+ GA F+
Sbjct: 697 STALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736
>Z81070-9|CAB03002.1| 132|Caenorhabditis elegans Hypothetical
protein F26E4.9 protein.
Length = 132
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 327 VTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGHELSKSTG 461
+ K + LV P ++ RTL A P+D G L +TG
Sbjct: 4 LAKTAVAALSKKLVAPAAVARRTLATEASPEDYGYYPDPLEHATG 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,060
Number of Sequences: 27780
Number of extensions: 310503
Number of successful extensions: 675
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -