Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I11
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0352 - 42958903-42959010,42959928-42960142,42960651-429607... 30 0.71
09_02_0439 + 9406451-9407178,9407225-9407603,9407887-9408038,940... 29 2.2
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 29 2.2
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470... 28 2.9
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 28 3.8
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 27 5.0
03_05_0344 - 23316919-23317314,23317474-23317868,23320889-233213... 27 6.6
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 27 6.6
>01_07_0352 -
42958903-42959010,42959928-42960142,42960651-42960773,
42960884-42960973,42961057-42961164,42961623-42961808,
42961858-42961923,42962312-42962495
Length = 359
Score = 30.3 bits (65), Expect = 0.71
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 296 IATKKNHSTTRHESESLSVLKQPDRPHSRFDRQYKLLTTTRR 171
I T + +TT +S S S K D P R R LL++TRR
Sbjct: 278 IDTGRESTTTTSQSHSRSRAKNQDNPTKRGARPSNLLSSTRR 319
>09_02_0439 +
9406451-9407178,9407225-9407603,9407887-9408038,
9408432-9408504,9409255-9409275
Length = 450
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 282 FFCCDLFTMKTDYAMDEMQKKTSSIIG 362
FF DL TM+T A +++Q K+ ++G
Sbjct: 360 FFAVDLDTMETPRATEQVQTKSKGVVG 386
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 284 KNHSTTRHESESLSVLKQPDRPHSRFDR---QYKLLTTTRRCNLIC 156
K+ + H + + + QPDRP DR + +T+ + CN+ C
Sbjct: 335 KSRKSIDHPDKPRASVDQPDRPRRSIDRFGGMMRSVTSVKLCNIDC 380
>09_02_0133 +
4707944-4708308,4708320-4708534,4708626-4708672,
4708997-4709393,4710042-4710608,4710708-4710838,
4711274-4711747
Length = 731
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 169 HLRVVVKSLYCLSKRLCGLSGCLRTERDSDSCLV 270
+LR V Y + C SG + T+R D CL+
Sbjct: 415 NLRTVCGITYFTCREACEKSGLVETDRSHDDCLI 448
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 169 HLRVVVKSLYCLSKRLCGLSGCLRTERDSDSCL 267
HLR V Y + C SG + T+ D CL
Sbjct: 1277 HLRTVCGITYSTCREACEKSGLVETDMSHDDCL 1309
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 273 RVVFFCCDLFTMKTDYAMDEMQK-KTSSIIGLSDVTDNKLIWRQLIAEL 416
RV FCC LFT ++ +QK +T + K WR+++ +
Sbjct: 169 RVFCFCCKLFTKGREHRYQRLQKDQTIDKAAQRQLEKEKDHWRKVLLRI 217
>03_05_0344 -
23316919-23317314,23317474-23317868,23320889-23321384,
23322346-23322366
Length = 435
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 297 LFTMKTDY--AMDEMQKKTSSIIGLSDVTDNKLIWRQL 404
+FT+++ Y A+D + +++G S D + +W L
Sbjct: 263 MFTVRSAYKLALDIQTRSQGNVVGCSSAADGRKVWSDL 300
>02_05_0562 - 29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 308 HREQIATKKNHSTTRHESES-LSVLKQPDRPHSRFDRQYKLLT 183
HR+Q+ H+TT H +++ L ++K+ DR + +R +L T
Sbjct: 900 HRQQLENVPQHTTTVHSNQADLQIIKE-DRVNPCLERLERLET 941
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,354
Number of Sequences: 37544
Number of extensions: 200619
Number of successful extensions: 474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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