Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I09
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    32   0.029
SPAC167.04 |pam17||presequence translocase-associated motor subu...    29   0.27 
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    28   0.62 
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   2.5  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   5.8  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    24   7.7  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 12  VLSEEILKCRENPIYMYEISNHFFQHLHVLENQYPGRITFK-IADFFGMWKR 164
           +L + IL     P+   E+  H  +HLH L  Q+P  +    I+   GM KR
Sbjct: 460 ILLQHILHLTRQPMISMELLEHLTEHLHSLAQQFPSALGISFISVVEGMRKR 511


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 364 PGIVINRSGLPS*FVVLWKTMLFIKCLTKE 275
           PG+V+ R   P  F+ LWKT   +K  + E
Sbjct: 7   PGLVVKRLQSPKIFLTLWKTCYNVKTYSTE 36


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -3

Query: 102 LTHVNVGKNDLIFHTYKLDFLDILEFLHSKHP 7
           L H ++ + +L++H  K+ F+D+ + +   HP
Sbjct: 285 LVHADLSEYNLLYHKGKVYFIDVSQSVEHDHP 316


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 384 NILHTGDLAL**TGRACQVDLLCCGKQCYLL 292
           N++HT DL     G  C+V  LC G   Y L
Sbjct: 416 NVIHTLDLIQDGKGDYCEVMELCSGGDLYTL 446


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 21  EEILKCRENPIYMYEISN 74
           +++L   ENP Y++E+ N
Sbjct: 153 QQLLSYSENPFYLFEVKN 170


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 174 DKMDHGNRIQELLGSLATNNNDRIVKIIGSMPGLSFVRHLINNIV 308
           DK+  GN+I+E+    A + ++ I K++     LS     +NN +
Sbjct: 22  DKVLDGNQIEEMSRGNAKSKDEIIAKLLTEGQALSKNELKLNNTI 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,845
Number of Sequences: 5004
Number of extensions: 38955
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)