Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I09
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0620 - 19321612-19323237                                         29   1.8  
10_05_0075 + 8869087-8869413,8869823-8870053,8871145-8871267,887...    27   5.6  
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542...    27   5.6  
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210...    27   7.3  
02_01_0664 + 4942772-4943200,4943269-4943973                           27   7.3  
08_02_1496 - 27541081-27541549,27541626-27541888                       26   9.7  

>10_08_0620 - 19321612-19323237
          Length = 541

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 171 QDKMDHGNRIQELLGSLATNNNDRIVKIIG 260
           +DK+ H + ++E+  S+   NN++IVKI G
Sbjct: 353 EDKLGHAHLVEEI--SVGDGNNNKIVKITG 380


>10_05_0075 +
           8869087-8869413,8869823-8870053,8871145-8871267,
           8871873-8872091
          Length = 299

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 294 INNIVFHNTTNQLGRPDLFITMPGHQYEVCFIYY 395
           I +I+F +T  QLG+  L +  PG    VC + Y
Sbjct: 197 IRSILFPHTIQQLGQAPLRVQYPGLYKLVCNVAY 230


>02_02_0520 +
           11152718-11153600,11153736-11153917,11154160-11154249,
           11154343-11154627,11154776-11154994,11155112-11155339
          Length = 628

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 192 FHDPFCLGKHVSTYQRNQLF*KLYGPG 112
           F  PFCLGK    Y+ N+L     G G
Sbjct: 40  FRCPFCLGKKKQDYRYNELLQHAIGVG 66


>02_04_0182 +
           20719782-20720033,20720502-20720605,20720693-20721066,
           20721302-20721609,20721853-20722092
          Length = 425

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 274 RPGIEPMIFTILSLLLVAKLPSNSC 200
           +P + P++  ++ LLLV  LP+ +C
Sbjct: 3   KPTLPPVVVVVVLLLLVVVLPATTC 27


>02_01_0664 + 4942772-4943200,4943269-4943973
          Length = 377

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 173 LESTFPHTKEISYFKSYTARVLIF 102
           L S  P  KE+ YFK Y AR+  F
Sbjct: 142 LFSVLPLWKELDYFKEYAARLRSF 165


>08_02_1496 - 27541081-27541549,27541626-27541888
          Length = 243

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = -3

Query: 162 VSTYQRNQLF*KLYGPGIDFLTH--VNVGKNDLIFHTYKLDFLDILEFLHSKHPSC 1
           +  Y    +  KL G GID +TH  VN     + FH          + + SK P C
Sbjct: 104 IKNYWNTHIRRKLLGRGIDPVTHRPVNAAAATISFHPQPPPTTKEEQLILSKPPKC 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,992,684
Number of Sequences: 37544
Number of extensions: 214232
Number of successful extensions: 471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)