Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I09
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical ... 32 0.18
Z98851-1|CAB11539.2| 327|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr... 28 2.9
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ... 28 2.9
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ... 28 2.9
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ... 28 2.9
Z70311-5|CAA94378.2| 527|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z82283-4|CAB05286.1| 689|Caenorhabditis elegans Hypothetical pr... 27 5.0
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 27 5.0
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 27 6.7
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 27 6.7
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 27 6.7
AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear recep... 26 8.8
AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormo... 26 8.8
>AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical
protein Y92H12A.4 protein.
Length = 782
Score = 31.9 bits (69), Expect = 0.18
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = +3
Query: 84 QHLHVLENQYPGRITFKIADFFGMWKRAFQDKMDHGNRIQELLGSLATNNN 236
Q L+VL Q G I KIA WK F D D ++ LL SL T +
Sbjct: 558 QELNVLIKQLQGEIGTKIAKLKDQWKE-FDDDADKCEAVEGLLVSLLTTGD 607
>Z98851-1|CAB11539.2| 327|Caenorhabditis elegans Hypothetical
protein H12I19.1 protein.
Length = 327
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 12 VLSEEILKCRENPIYMYEISNHFFQHLHVLENQYPGRITFKIADFFG---MWKRAF 170
V ++ K R+ +++ I+NHFF+ + +N + G I F + FF ++K++F
Sbjct: 46 VYVNKVNKERDKNAFVFPITNHFFE---MTKNAFIGYIYFPVNCFFAVALIYKKSF 98
>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 HNTTNQLGRP-DLFITMPGHQYEVCFIYY 395
HN N L R D+ + MPG VC YY
Sbjct: 737 HNELNNLRRKTDVALVMPGSALNVCLQYY 765
>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 HNTTNQLGRP-DLFITMPGHQYEVCFIYY 395
HN N L R D+ + MPG VC YY
Sbjct: 701 HNELNNLRRKTDVALVMPGSALNVCLQYY 729
>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 HNTTNQLGRP-DLFITMPGHQYEVCFIYY 395
HN N L R D+ + MPG VC YY
Sbjct: 740 HNELNNLRRKTDVALVMPGSALNVCLQYY 768
>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 HNTTNQLGRP-DLFITMPGHQYEVCFIYY 395
HN N L R D+ + MPG VC YY
Sbjct: 737 HNELNNLRRKTDVALVMPGSALNVCLQYY 765
>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 HNTTNQLGRP-DLFITMPGHQYEVCFIYY 395
HN N L R D+ + MPG VC YY
Sbjct: 701 HNELNNLRRKTDVALVMPGSALNVCLQYY 729
>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 HNTTNQLGRP-DLFITMPGHQYEVCFIYY 395
HN N L R D+ + MPG VC YY
Sbjct: 740 HNELNNLRRKTDVALVMPGSALNVCLQYY 768
>Z70311-5|CAA94378.2| 527|Caenorhabditis elegans Hypothetical
protein T25B9.7 protein.
Length = 527
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 358 IVINRSGLPS*FVVLWKTMLFIKCLTKERP--GIEP 257
I+I L S +++WKT+ FIKC R IEP
Sbjct: 487 ILIVVLSLTSSLIIIWKTLSFIKCQISIRSVRSIEP 522
>Z82283-4|CAB05286.1| 689|Caenorhabditis elegans Hypothetical
protein T23G4.4 protein.
Length = 689
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 176 VLESTFPHTKEISYFKSYTARVLIF*HM*MLEKMI*YFIHINWIF 42
+ ES PHT E +YF+ + +F H L I ++I + IF
Sbjct: 116 IFESNRPHTGEENYFEKLSIASDLFTHTWSLSVEIQFYIIVPVIF 160
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 298 FIKCLTKERPGIEPMIFTILSLLLVAKL 215
F + KE +EPM I SL+L AKL
Sbjct: 148 FFETSAKEDKNVEPMFTCITSLVLTAKL 175
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 162 RAFQDKMDHGNRIQELLGSLATNNNDRIVKIIGSMPGLSFVRH 290
RA+ K + G EL+G++ + + +K+ GS+ GL+ +H
Sbjct: 25 RAYIFKAEAGKIPTELIGTIDFDQSGSFLKLNGSVSGLAAGKH 67
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 162 RAFQDKMDHGNRIQELLGSLATNNNDRIVKIIGSMPGLSFVRH 290
RA+ K + G EL+G++ + + +K+ GS+ GL+ +H
Sbjct: 25 RAYIFKAEAGKIPTELIGTIDFDQSGSFLKLNGSVSGLAAGKH 67
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 162 RAFQDKMDHGNRIQELLGSLATNNNDRIVKIIGSMPGLSFVRH 290
RA+ K + G EL+G++ + + +K+ GS+ GL+ +H
Sbjct: 25 RAYIFKAEAGKIPTELIGTIDFDQSGSFLKLNGSVSGLAAGKH 67
>AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear receptor
NHR-124 protein.
Length = 376
Score = 26.2 bits (55), Expect = 8.8
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 ISNHFFQHLHVL-ENQYPGRITFKIADFFGMWKRAFQDKMDHGNRIQELL--GSLATNNN 236
I + FFQHLH L E +Y I + +F D + G+++ L + N
Sbjct: 118 IDSTFFQHLHALNETRYNAYCVINICE-----DPSFCDLVAQGSKLSVYLRPQEIEWENT 172
Query: 237 DRIVKIIGSMPGLSFVRHLINNIVFHN 317
+R +K GS+ G+ + + F+N
Sbjct: 173 ERKLKPWGSL-GVLLAVEVCKGLSFYN 198
>AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 124 protein.
Length = 376
Score = 26.2 bits (55), Expect = 8.8
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 ISNHFFQHLHVL-ENQYPGRITFKIADFFGMWKRAFQDKMDHGNRIQELL--GSLATNNN 236
I + FFQHLH L E +Y I + +F D + G+++ L + N
Sbjct: 118 IDSTFFQHLHALNETRYNAYCVINICE-----DPSFCDLVAQGSKLSVYLRPQEIEWENT 172
Query: 237 DRIVKIIGSMPGLSFVRHLINNIVFHN 317
+R +K GS+ G+ + + F+N
Sbjct: 173 ERKLKPWGSL-GVLLAVEVCKGLSFYN 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,159,577
Number of Sequences: 27780
Number of extensions: 215127
Number of successful extensions: 437
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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