Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I08
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    27   1.4  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   4.3  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   4.3  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    25   5.6  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   7.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    24   7.4  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    24   9.8  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    24   9.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    24   9.8  

>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 SGDNKASALLGYTLHQRQNNAHAQHDSSHP 374
           SG   AS   GY L +  +NA +  D+ HP
Sbjct: 58  SGVAAASLTAGYLLGKNTSNASSSQDNDHP 87


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 244 LRRLLIKIQKTKMTVEI 294
           +R LLI++QKTK+ VE+
Sbjct: 419 VRTLLIQLQKTKVDVEV 435


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 164 FIKLKT*NLIYCIKVRSIHKEYYKFF 87
           F  L T NLI  +  RS+H ++Y +F
Sbjct: 320 FTALATSNLIGILCARSLHYQFYAWF 345


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 36  MILFYFSLPT*VNGLREEKLVIFFVNGTYFNTIDKILRFQL 158
           M+ FY   P  V+     + V F+++   F+ +  +L  +L
Sbjct: 139 MVAFYSFAPAIVDVFGNNQFVAFYISSILFSNVASLLHHRL 179


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 270 EDEDDSGDNKASALLGYTLHQRQNNAHAQHDS 365
           E+ED S +NK+ + LG +    Q+N    + S
Sbjct: 165 EEEDLSNENKSESQLGESFSFNQDNTFVNYAS 196


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 141 ILRFQ--LYKSLIYATCTLGVVAVGLXXKQFPXXXXXPSSSNQNTEDEDDSGDN 296
           +++FQ  L K + Y    LG+ ++ L             +SN+NTE E D  D+
Sbjct: 776 LVQFQEKLPKYINYCNLILGIPSLQLVRPDIYDSIREMIASNENTEVEKDKLDS 829


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 214 YRPTATTPRVHVAYISD 164
           Y P  TTP +H+A  SD
Sbjct: 160 YNPKLTTPSLHIAGTSD 176


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 156 LYKSLIYATCTLGVV 200
           L K+LIY+TCT+  V
Sbjct: 260 LNKALIYSTCTISAV 274


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 156 LYKSLIYATCTLGVV 200
           L K+LIY+TCT+  V
Sbjct: 227 LNKALIYSTCTISAV 241


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 249 SSSNQNTEDEDDSGDNKASALLGYTLHQRQNNAHAQHDSSHPS 377
           SSS  + +  + S  ++ S     ++H++QN  HA + SS  S
Sbjct: 153 SSSQFSKKYSEGSLKSQQSNTRSNSVHEKQNTDHASNASSSSS 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,433
Number of Sequences: 5004
Number of extensions: 26975
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)