Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I08
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643...    29   1.4  
04_03_0096 + 11158108-11159083,11159116-11159744                       28   2.4  
11_01_0087 - 654461-654912,655878-657186,659080-659187                 28   3.1  
11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236     27   5.5  
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595     27   5.5  
08_01_0903 - 8897977-8899016,8899128-8899300,8901553-8901666,890...    27   5.5  
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    27   7.2  
12_02_0029 - 12459565-12459804,12460013-12460121,12460507-124605...    26   9.6  
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140...    26   9.6  

>03_02_0211 -
           6436275-6436361,6436969-6437235,6438475-6438543,
           6439108-6439236,6439319-6439480,6439558-6439678,
           6439813-6439928,6440697-6440762,6441010-6441091,
           6441236-6441327,6441430-6441537,6441919-6442013,
           6442092-6442234,6442336-6442364,6442452-6442571,
           6442645-6442734,6443116-6443181,6443267-6443380,
           6443482-6443574
          Length = 682

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 145 KILSIVLKYVPFTKNITSFSSRNPFT 68
           KIL   LK VPF++N+   SS NP++
Sbjct: 571 KILRTRLKTVPFSENLKRTSSTNPYS 596


>04_03_0096 + 11158108-11159083,11159116-11159744
          Length = 534

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 255 SNQNTEDEDDSGDNKASALLGYTLHQRQNNAHAQHDSS 368
           S+ + +D+D  GD+  S + GY  H  ++   ++ DSS
Sbjct: 418 SHSDDDDDDTDGDDYGSNI-GYNSHSEEDGDDSEEDSS 454


>11_01_0087 - 654461-654912,655878-657186,659080-659187
          Length = 622

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 246 PSSSNQNTEDEDDSGDNKASALLGYTLHQRQNNAHAQHDSSHPS 377
           P SS   ++D+D S  + ++A+   +LHQ+Q +  A      P+
Sbjct: 478 PPSSVSVSDDDDSSTSSLSAAVSASSLHQQQQHCSASSSRLGPA 521


>11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236
          Length = 439

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 246 PSSSNQNTEDEDDSGDNKASALLGYTLHQRQNNAHAQHDSSH 371
           PS+ + +  D+DD GD +A+A    T    + +  AQ D SH
Sbjct: 383 PSTYSDDDVDDDDEGDTEAAAEDAPT-DVDEGDTAAQSDESH 423


>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
          Length = 514

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 249 SSSNQNTEDEDDSGDNKASALLGYTLHQRQNNAHAQHDSSHPSR 380
           SSSN+   +++      A ALL Y L ++   A+  H S  P +
Sbjct: 162 SSSNEPESNDEQEQIRIARALLNYRLKEKMAMANNPHASPFPKK 205


>08_01_0903 -
           8897977-8899016,8899128-8899300,8901553-8901666,
           8901743-8901836,8901925-8902103,8902165-8902496,
           8913058-8913306
          Length = 726

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -1

Query: 207 PLLPHREYMLHISVIYKVENVKSYLLY*STF 115
           PLL   + MLHIS  Y    +KS LLY S F
Sbjct: 412 PLLQGIKRMLHISYAYLSLPLKSCLLYLSLF 442


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -1

Query: 315 LXVPMPYYLHCHLRLLYFD*KTTEXXXXLGIVLXIDPLLPHREYMLHISVIY 160
           L  PMP +L+    L Y D         +   L   P+L   +Y  H ++++
Sbjct: 437 LTGPMPSWLNSFNNLFYLDVSNNSLTGQIPATLIEIPMLKSDDYKAHRTILF 488


>12_02_0029 -
           12459565-12459804,12460013-12460121,12460507-12460599,
           12460965-12461208,12462302-12462338
          Length = 240

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +2

Query: 65  LGKWVTRRKT---CNILCEWN 118
           +G+W  +R+T   C ++C+WN
Sbjct: 117 MGRWYMQRRTTMTCFVICKWN 137


>02_05_1219 +
           35011571-35011897,35012008-35013780,35013915-35014068,
           35014158-35014801
          Length = 965

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 195 VVAVGLXXKQFPXXXXXPSSSNQNTEDEDDS 287
           V+  GL   Q P     PSSS+   + EDDS
Sbjct: 369 VLKPGLVKSQEPKILRSPSSSSTAADSEDDS 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,875,080
Number of Sequences: 37544
Number of extensions: 147470
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)