Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I08
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine re...    31   0.40 
Z93384-4|CAE17903.1|  308|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U41556-12|AAK39191.2|  477|Caenorhabditis elegans Nuclear hormon...    27   4.9  
AY305848-1|AAR11992.1|  477|Caenorhabditis elegans nuclear recep...    27   4.9  
AL021492-15|CAE18000.1|  308|Caenorhabditis elegans Hypothetical...    27   4.9  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p...    26   8.5  
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p...    26   8.5  
AF036705-1|AAB95170.1|  249|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine
           receptor, class z protein67 protein.
          Length = 322

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 27  YYIMILFYFSLPT*VNGLREEKLVIFFVNGTYFNTI 134
           Y+I++ FY  +   VN  R+EK+VIF +   Y+N +
Sbjct: 33  YFILLPFYIYVNK-VNRRRDEKMVIFPITNHYYNML 67


>Z93384-4|CAE17903.1|  308|Caenorhabditis elegans Hypothetical
           protein Y45F10D.15 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = -1

Query: 336 AVGVKYTLXVPMPYYLHCHLRLLYF---D*KTTEXXXXLGIVLXIDPLLPHREYMLHISV 166
           AVG      V     L  +L +LYF     KT        +++   PL+P R +    + 
Sbjct: 16  AVGHHRCYFVVAESILMIYLTVLYFRMRKIKTPTEMYIRNLLIIAWPLIPIRLFKTGFTF 75

Query: 165 IYKVENVKSYLLY*STFHSQRILQVFLRVTHL 70
            + +E  +SYLL       +  LQ F  + HL
Sbjct: 76  FFPLEASQSYLLC-IFLRIETTLQYFFNLAHL 106


>U41556-12|AAK39191.2|  477|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 120 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 228 PXXXXXPSSSNQNTEDEDDSGDNKAS 305
           P     PSS N N  D+ DSGD  ++
Sbjct: 158 PSAIQFPSSKNHNEADDMDSGDEDSN 183


>AY305848-1|AAR11992.1|  477|Caenorhabditis elegans nuclear receptor
           NHR-120 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 228 PXXXXXPSSSNQNTEDEDDSGDNKAS 305
           P     PSS N N  D+ DSGD  ++
Sbjct: 158 PSAIQFPSSKNHNEADDMDSGDEDSN 183


>AL021492-15|CAE18000.1|  308|Caenorhabditis elegans Hypothetical
           protein Y45F10D.15 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = -1

Query: 336 AVGVKYTLXVPMPYYLHCHLRLLYF---D*KTTEXXXXLGIVLXIDPLLPHREYMLHISV 166
           AVG      V     L  +L +LYF     KT        +++   PL+P R +    + 
Sbjct: 16  AVGHHRCYFVVAESILMIYLTVLYFRMRKIKTPTEMYIRNLLIIAWPLIPIRLFKTGFTF 75

Query: 165 IYKVENVKSYLLY*STFHSQRILQVFLRVTHL 70
            + +E  +SYLL       +  LQ F  + HL
Sbjct: 76  FFPLEASQSYLLC-IFLRIETTLQYFFNLAHL 106


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
           protein H06O01.2 protein.
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 246 PSSSNQNTEDEDDSGDNKASALLGYTLHQRQNNAHAQHDS 365
           P SS+  ++D DD+ +N +S+       +++NN +   D+
Sbjct: 48  PESSSDQSDDSDDASENSSSSEPDEPAPKKKNNNNRGMDA 87


>Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical
           protein C03D6.5 protein.
          Length = 245

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 258 NQNTEDEDDSGDNKASALLGYTLHQRQNNAH 350
           ++  ED+D++G N     L  + ++R  NAH
Sbjct: 188 DEEEEDDDETGPNTEEVDLNESFNERMANAH 218


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 249 SSSNQNTEDEDDSGDNKASALLGYTLHQRQNNAHAQH 359
           SSS+ ++    +S D K  A   +  H+ ++ AH +H
Sbjct: 348 SSSSSSSSSSSESEDEKKHAPAHHEHHEHKDGAHHEH 384


>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 246 PSSSNQNTEDEDDSGDN 296
           PSS N N ED+DD  D+
Sbjct: 576 PSSDNDNDEDDDDDVDD 592


>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 246 PSSSNQNTEDEDDSGDN 296
           PSS N N ED+DD  D+
Sbjct: 576 PSSDNDNDEDDDDDVDD 592


>AF036705-1|AAB95170.1|  249|Caenorhabditis elegans Hypothetical
           protein F37C4.4a protein.
          Length = 249

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/62 (19%), Positives = 27/62 (43%)
 Frame = +3

Query: 174 YATCTLGVVAVGLXXKQFPXXXXXPSSSNQNTEDEDDSGDNKASALLGYTLHQRQNNAHA 353
           ++ C+L  +++GL    F             +E+E++   N+      YT+ Q+    H 
Sbjct: 3   FSICSLKNLSMGLLRPNFEEPTARLMPGPVTSEEEEEFSSNERRRYKAYTVMQKAGFQHT 62

Query: 354 QH 359
           ++
Sbjct: 63  EY 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,159,401
Number of Sequences: 27780
Number of extensions: 147093
Number of successful extensions: 439
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)