Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I07
         (55 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0955 + 9502972-9503067,9503532-9503630                           25   8.1  
08_02_1436 + 27083698-27084111,27084333-27084416,27084502-270845...    25   8.1  

>12_01_0955 + 9502972-9503067,9503532-9503630
          Length = 64

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 10 NSARGRGGFNPPP 48
          + ARGRGG +PPP
Sbjct: 8  DDARGRGGGSPPP 20


>08_02_1436 +
           27083698-27084111,27084333-27084416,27084502-27084551,
           27084676-27084724,27085471-27085545,27085724-27085837
          Length = 261

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 1   CCRNSARGRGGFNPPP 48
           CCR  A G  G  PPP
Sbjct: 55  CCRCEAAGEAGTAPPP 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,494
Number of Sequences: 37544
Number of extensions: 17536
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 14,793,348
effective HSP length: 0
effective length of database: 14,793,348
effective search space used: 251486916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)