Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I05
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical pr...    27   3.1  
U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical p...    27   3.1  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    26   5.4  
L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z81453-7|CAB03797.2|  457|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    25   9.4  
AF264764-1|AAQ14296.1|  457|Caenorhabditis elegans sterol reduct...    25   9.4  

>Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical
           protein F21G4.1 protein.
          Length = 640

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 283 LAVPRLAKPRTHKYPNIFNTIYSNIRIKIRHD*ILKSFSDLLKSNYNVTIF 131
           LAVP    PRT+K+P+ F+ +  + R ++       S  D L    N+T+F
Sbjct: 255 LAVPFFFFPRTYKHPDSFHLMLEHSRPQV-------SPEDRLTFKENITLF 298


>U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical
           protein C32D5.12 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 221 NCVKNVRILVSSRFCEPRHCQ 283
           NC  ++R    SRF  P +CQ
Sbjct: 248 NCAHSIRDFFESRFLNPNYCQ 268


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 181 LKSFSDL---LKSNYNVTIFTWAPYNKFATG 98
           LKSF  +   L SN++  IFT  PY++F +G
Sbjct: 165 LKSFKMVQRSLNSNFDNIIFTRNPYDRFISG 195


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical protein
            F07A11.4 protein.
          Length = 1095

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 92   MVCHCGQQYFGH 57
            +VCH G  YFGH
Sbjct: 1011 VVCHSGNSYFGH 1022


>L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical
           protein ZK688.2 protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -3

Query: 151 NYNVTIFTWAPYNKFATGLRWYATVGNSILV 59
           NYN+ + T  P+  F   L+W  ++  ++++
Sbjct: 4   NYNLAVSTSKPWTLFKLLLKWRGSIWKAVIL 34


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 33  DARSRLLSMTKILLPTVAYHLRPVANLLYGAQV 131
           +ARS  ++++K++ PT   H R V +L  G  V
Sbjct: 293 EARSEPITVSKLVQPTTLKHSRSVPSLHGGTLV 325


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 33  DARSRLLSMTKILLPTVAYHLRPVANLLYGAQV 131
           +ARS  ++++K++ PT   H R V +L  G  V
Sbjct: 293 EARSEPITVSKLVQPTTLKHSRSVPSLHGGTLV 325


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 33  DARSRLLSMTKILLPTVAYHLRPVANLLYGAQV 131
           +ARS  ++++K++ PT   H R V +L  G  V
Sbjct: 287 EARSEPITVSKLVQPTTLKHSRSVPSLHGGTLV 319


>Z81453-7|CAB03797.2|  457|Caenorhabditis elegans Hypothetical
           protein B0250.9 protein.
          Length = 457

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 84  PLWATVFWS*IIVYCAHPFVAYF 16
           P+W TV W    V+CA   + Y+
Sbjct: 93  PVWDTVAWKFSAVHCAIQLIFYW 115


>Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical
           protein C47E12.6b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 109 FATGLRWY--ATVGNSILVIDNSLLRASICSI 20
           F  G+R Y  +    S ++IDN L  AS+C +
Sbjct: 131 FRIGIRAYGISNTDGSFVMIDNILYSASLCKV 162


>Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical
           protein C47E12.6a protein.
          Length = 738

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 109 FATGLRWY--ATVGNSILVIDNSLLRASICSI 20
           F  G+R Y  +    S ++IDN L  AS+C +
Sbjct: 186 FRIGIRAYGISNTDGSFVMIDNILYSASLCKV 217


>U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical
           protein D2096.6 protein.
          Length = 171

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 61  PKYCCPQWHTI*GPWQ 108
           P +CCP W T    W+
Sbjct: 87  PYFCCPVWSTYGAAWR 102


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 157 KSNYNVTIFTWAPYNKF 107
           ++N+  T+FTW+P+  +
Sbjct: 202 RANWTETVFTWSPHGSY 218


>AF264764-1|AAQ14296.1|  457|Caenorhabditis elegans sterol reductase
           protein.
          Length = 457

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 84  PLWATVFWS*IIVYCAHPFVAYF 16
           P+W TV W    V+CA   + Y+
Sbjct: 93  PVWDTVAWKFSAVHCAIQLIFYW 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,298,730
Number of Sequences: 27780
Number of extensions: 111169
Number of successful extensions: 257
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)