Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I05
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   9.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 92  MVCHCGQQYFGH 57
           M CH G  ++GH
Sbjct: 272 MFCHTGLGHYGH 283


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 108 LPRASDGMPLWATVF 64
           LP+ SD +PL  + F
Sbjct: 247 LPQVSDAIPLLGSYF 261


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 108 LPRASDGMPLWATVF 64
           LP+ SD +PL  + F
Sbjct: 247 LPQVSDAIPLLGSYF 261


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 108 LPRASDGMPLWATVF 64
           LP+ SD +PL  + F
Sbjct: 247 LPQVSDAIPLLGSYF 261


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 108 LPRASDGMPLWATVF 64
           LP+ SD +PL  + F
Sbjct: 315 LPQVSDAIPLLGSYF 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,749
Number of Sequences: 438
Number of extensions: 1486
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)