Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I04
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    57   3e-09
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    43   4e-05
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    32   0.062
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            29   0.58 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    29   0.58 
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    26   4.1  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    26   4.1  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.4  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   9.4  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.4  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
 Frame = +3

Query: 168 KFPAGKVPAFESADGKVLLTESNAIAYYVANDD----LRGGDLATQARVLQWASWADSEL 335
           KFP  K+P F   DG   L+E+ AIA+Y+A+ +    L G     +A+VLQ+ S+ +SEL
Sbjct: 46  KFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSEL 104

Query: 336 LPASCAWVFPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADI 503
             A    + P +    +++Q  + A+               S+T+LV  R+TLADI
Sbjct: 105 PGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADI 160


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
 Frame = +3

Query: 24  MAAGVLYTYPENFRAYNALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFES 203
           M  G LY++  N R    L  A+     V +   +       + +   KFP  K+P F  
Sbjct: 1   MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57

Query: 204 ADGKVLLTESNAIAYYVA---NDDLRG-GDL--ATQARVLQWASWADSELL-PASCA-WV 359
           ADG  L      + Y+     ++D  G G +    +A +L+W  + + +++ P +   WV
Sbjct: 58  ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117

Query: 360 FPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTLLACF 533
             + G + + ++  + +                 RT+LV +R TLAD+  + +LL  F
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADLF-FGSLLRIF 174


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
 Frame = -2

Query: 460 LKRCPSRSCSAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLSAHEA-HCNTRACVA 284
           LK    R+ +     FF +S   + + ++  +GKT +  + +SSL+A  + + +     A
Sbjct: 28  LKLMSDRNANQELDFFFPKSKH-IASTLVDPFGKTCSTASPASSLAADMSMNMHIDESPA 86

Query: 283 RSPPRRSSFAT**A-----IALLSVSKTLPSALSNAGTLPAGNFFK----KFSVLLVSPN 131
              PRR+ F +        +A  ++   LP + SN   L    FF+    K+S+   SP 
Sbjct: 87  LPTPRRTLFRSLSCTVETPLANKTIVSPLPESPSN-DALTESYFFRQPASKYSITQDSPR 145

Query: 130 TKSGATFTFAPEYCAAIN 77
             S   ++F P+   A+N
Sbjct: 146 VSSTIAYSFKPKASIALN 163


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 268 CEVETWQHRH---VCCNGPHGLTVNC 336
           C+  TW  +H   VCC+GP+ L  +C
Sbjct: 11  CQFLTWNSKHNYIVCCSGPYLLGFSC 36


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 51  PENFRAYNALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFESADGKVLLTE 230
           P  F++  A +  QY+ A        +FG  +K +NF K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 231 SN 236
           SN
Sbjct: 612 SN 613


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 347 LRMGLSIFRHHAVQQTECRACKE*FTGCTATSGWTSFEPHFPGHGEDYSCRYYRLQH 517
           L  G+S  +   +   +       FT   +++  TSF   F GHG D   +Y R QH
Sbjct: 22  LHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCR-QH 77


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 198 RMLVLYPPGTSSRSFQSCWSHRIQNR 121
           ++L ++PP TSSR   + W+ ++ N+
Sbjct: 118 KILDVHPPQTSSRKAATTWACKVHNQ 143


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 241 IALLSVSKTLPSALSNAGTLPAGNF 167
           + L+S S+TLP   S + + P  NF
Sbjct: 2   VGLISTSETLPKQESKSSSAPVSNF 26


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +2

Query: 446 WTSFEPHFPGHGEDYSCRYYRLQHAACMLSNMC-WIRLY 559
           W S +PH      DYS R  +  H   +  N+C W   Y
Sbjct: 198 WQSNDPHLISSVPDYSARPRKYAHVPIL--NLCLWNHAY 234


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -2

Query: 289 VARSPPRRSSFAT**AIALLSVSKTLPSALSNAGTLPAGNFFKKFSVLLVSPNTKSGATF 110
           V  + P R   AT   ++ +SVSK LP+ L         N       ++ S  TK GA F
Sbjct: 67  VVSNSPHRQDAATTNTVSTVSVSKVLPALLLGVVLAALDN------TIVASTYTKIGAEF 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,238
Number of Sequences: 5004
Number of extensions: 62701
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)