Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I04
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 99 2e-21
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 95 3e-20
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 49 3e-06
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 42 3e-04
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 38 0.009
03_01_0249 - 1935355-1935827,1936129-1936330 32 0.34
10_01_0130 + 1540412-1541173 31 1.0
05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189 30 1.8
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460... 30 1.8
02_04_0542 - 23762549-23762961,23763051-23763453 29 3.2
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 4.2
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 29 4.2
04_04_0633 - 26771487-26771591,26771708-26771782,26771906-267719... 28 5.6
02_02_0026 + 6187860-6187940,6188136-6188207,6188302-6188395,618... 28 5.6
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 7.4
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 28 7.4
07_03_1072 - 23755657-23755662,23755964-23756137,23757144-237573... 28 7.4
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877 28 7.4
12_02_1193 + 26891619-26892456,26892545-26893884 27 9.7
11_06_0584 - 25220371-25222917 27 9.7
04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260 27 9.7
01_06_1109 - 34576866-34577043,34577774-34577845,34577934-345780... 27 9.7
>02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 99 bits (238), Expect = 2e-21
Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Frame = +3
Query: 36 VLYTYPENFRAYNALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFESADGK 215
VL+T+ N A+ ALIAA+YSG V++A +F G +NKT +LK P GKVP E+ DG
Sbjct: 565 VLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGP 624
Query: 216 VLLTESNAIAYYV-------------ANDDLRGGDLATQARVLQWASWADSELLPASCAW 356
V ESNAIA YV +++ L G L A + QW ++ +E+ + W
Sbjct: 625 VF--ESNAIARYVLSSSHFPEVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKW 682
Query: 357 VFPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTLLACF 533
+FP LG + + E A S T+LV +TLADI++ L F
Sbjct: 683 LFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGF 741
Score = 95.1 bits (226), Expect = 4e-20
Identities = 63/179 (35%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Frame = +3
Query: 36 VLYTYPENFRAYNALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFESADGK 215
VL+ N A+ ALIAA+YSG V++ +F G +NKT FLK P GK+P E+ DG
Sbjct: 4 VLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGP 63
Query: 216 VLLTESNAIAYYV-------------ANDDLRGGDLATQARVLQWASWADSELLPASCAW 356
V ESNAIA YV A++ L G L A + QW ++ +E+ W
Sbjct: 64 VF--ESNAIARYVLSHCHFPEVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKW 121
Query: 357 VFPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTLLACF 533
++P LGI + + E A S T+LV +TLADI++ L F
Sbjct: 122 LYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGF 180
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 95.5 bits (227), Expect = 3e-20
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Frame = +3
Query: 36 VLYTYPENFRAYNALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFESADGK 215
VL+ N A+ ALIAA+Y+G V++ +F G +NKT FLK P GK+P E+ +G
Sbjct: 28 VLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGA 87
Query: 216 VLLTESNAIAYYVA----NDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQ 383
V ESNAIA YVA N L G L + + QW ++ +E+ W++P LG
Sbjct: 88 VF--ESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGP 145
Query: 384 FNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTL 521
+ E A S T+LV +TLADI++ L
Sbjct: 146 YVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNL 191
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 49.2 bits (112), Expect = 3e-06
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = +3
Query: 78 LIAAQYSGANVK-VAPDFVFGETNKTENFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 254
L+ + +GA+ + VA D GE N++ + L + P GK+PAFE DG+V L ES AI YV
Sbjct: 18 LVCLEEAGASYELVAVDMAAGE-NRSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRYV 74
Query: 255 AN-----DDLRGGDLATQARVLQW 311
D LR G+L A V W
Sbjct: 75 LRNYNKPDLLREGNLEESAMVDMW 98
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 42.3 bits (95), Expect = 3e-04
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Frame = +3
Query: 24 MAAGVLYTYPENFRAYNALIAAQYSGANVKVAP-DFVFGETNKTENFLKKFPAGKVPAFE 200
MA +Y + L+ + GA +V P D GE +K + + P G+VPAFE
Sbjct: 1 MAPAKVYGPAMSTNVMRILVCLEEVGAEYEVVPVDMSTGE-HKRPPHISRNPFGQVPAFE 59
Query: 201 SADGKVLLTESNAIAYYV----ANDDLRGGDLATQARVLQW 311
DG + L ES AI+ Y+ +D LR +L+ A V W
Sbjct: 60 --DGDLTLFESRAISKYILRKHGSDLLRESNLSESAMVDVW 98
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 37.5 bits (83), Expect = 0.009
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Frame = +3
Query: 78 LIAAQYSGANVKVAPDFVFGET-NKTENFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 254
L+ + GA+ ++ D FG+ +K + L + P G+VPAF+ DG ++L ES AI Y+
Sbjct: 19 LLCLEEVGADYEIV-DVDFGDREHKGPDHLARNPFGQVPAFQ--DGDLMLFESRAICRYI 75
Query: 255 -----ANDD---LRGGDLATQARVLQW 311
A D+ LR GD + A V W
Sbjct: 76 LRKHRATDEANLLREGDPSESAVVDAW 102
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 123 DFVFGETNKTENFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANDDLRGGDLATQAR 299
D GE +K+ +FLK P G+VPAF+ D + ES AI Y+ + G+ R
Sbjct: 36 DMSKGE-HKSPSFLKLQPFGQVPAFK--DSLTTVFESRAICRYICDQYADSGNKTLMGR 91
>10_01_0130 + 1540412-1541173
Length = 253
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 463 RLKRCPSRSCSAASKSFFARSTFCLLNCMMPK 368
R +R PS + +AASK +FA FC+ PK
Sbjct: 203 RGRRRPSPAAAAASKMYFAFCPFCVAKAAQPK 234
>05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189
Length = 269
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 311 PLQHTCLCCQVSTSQVIICHVVSDSI 234
P HT LC + T+ V +CH VSDS+
Sbjct: 165 PSSHTALCTAL-TASVALCHGVSDSL 189
>02_01_0615 -
4604373-4604537,4604618-4604707,4604871-4604989,
4605132-4605234,4605318-4605414,4605512-4605575,
4605673-4605805,4605899-4606143,4606263-4606439,
4607110-4607419
Length = 500
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 433 SAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLS 323
S++S+ FF +L+C +P G+TH A ++S S
Sbjct: 11 SSSSRFFFLLVLVLVLSCSLPANGRTHRSPAAAASPS 47
>02_04_0542 - 23762549-23762961,23763051-23763453
Length = 271
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 427 ASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLSAHEAHCN 302
A+K F+ R F P +G+T + D ++A AH N
Sbjct: 89 AAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHAN 130
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 159 FLKKFPAGKVPAFESADGK 215
FLK P GKVP F DGK
Sbjct: 49 FLKISPEGKVPVFNGGDGK 67
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 459 SRTFLVTERITLADIIVYSTL 521
SRTFLV+ +++ADI+V+S L
Sbjct: 108 SRTFLVSYGLSIADIVVWSNL 128
>04_04_0633 -
26771487-26771591,26771708-26771782,26771906-26771981,
26772096-26772144,26772848-26773037,26773119-26773292,
26773415-26773543
Length = 265
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 466 LSWSRRGLLLQILSSTARCLHAFQHVLDPTVPSKLVN 576
LS + RGLLL +STA L Q +L PT P L++
Sbjct: 66 LSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLD 102
>02_02_0026 +
6187860-6187940,6188136-6188207,6188302-6188395,
6188480-6188640,6189053-6189123,6189231-6189312,
6189748-6189849,6189972-6190027,6190278-6190312,
6191495-6191579,6191658-6191717,6191819-6191858,
6192415-6192468
Length = 330
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 370 KYGKTHAQDAGSSSLSAHEAHCNTRACVARSPP 272
+YG + SLS H A CN R SPP
Sbjct: 39 QYGVVFITHSAHQSLSTHLADCNVRYMPVSSPP 71
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 391 LLNCMMPKYGKTHAQDAGSSSLSAHEAH 308
LLN ++P YG TH +D+ S S H
Sbjct: 59 LLNEVLPFYGNTHTEDSHVGSKSTRLVH 86
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 459 SRTFLVTERITLADIIVYSTL 521
SRTFLV +T+ADI V+S L
Sbjct: 106 SRTFLVGHVLTIADITVWSNL 126
>07_03_1072 -
23755657-23755662,23755964-23756137,23757144-23757380,
23758109-23758215,23758304-23758841
Length = 353
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 201 FRMLVLYPPGTSSRSFQSCWSHRIQNRGLLSRSP-RNIVRR 82
FRM V PP R+ + W + + L SR+P R I +R
Sbjct: 149 FRMSVEIPPSDDFRAMKKSWENFYASELLSSRNPVRKIAKR 189
>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
Length = 446
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Frame = +3
Query: 270 RGGDLATQARVLQWASW-ADSELLPASCAWVFPYLGIMQFNKQNVERAKNXXXXXXXXXX 446
R G LA W W A S++ WV L I ++ +K+
Sbjct: 153 RVGSLAASLAGTIWLRWVAASKVFDEM--WVHKMLAIAASVEEGHSASKDKQSELEGDAQ 210
Query: 447 XXXXSRTFLVTERITLADIIVYSTLLACFPTC 542
S FL + + + VYSTL CF C
Sbjct: 211 KSQSSYEFLFLRSLRMM-LPVYSTLAVCFLAC 241
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 204 ADGKVLLTESNAIAYYVANDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYL 371
A GK + E++A Y + GD T+A +L + + +LPAS +F L
Sbjct: 606 AKGKRAVAETSASEYSLWVPRFAPGDFETRADLLHFVEGVSNLVLPASAPSLFTEL 661
>11_06_0584 - 25220371-25222917
Length = 848
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -2
Query: 484 LSVTRKVRLKRCPSRSCSAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLS 323
+++ + R + P + K + +ST C C +P+ K DAG S+++
Sbjct: 386 INIRKTARRRELPQKQHQ--HKLRWTQSTICCCYCRVPRIMKATTADAGGSNIN 437
>04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260
Length = 456
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 177 AGKVPAFESADGKVLLTESNAIAYYVANDDLR--GGDLATQARVLQWA--SWADSEL 335
AG+ P+ + V LT SNA+ Y A ++ GDL + A SW + EL
Sbjct: 173 AGRYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASMSWFEQEL 229
>01_06_1109 -
34576866-34577043,34577774-34577845,34577934-34578079,
34578337-34578406,34578516-34578573,34578658-34578751,
34579264-34579347,34579958-34580341
Length = 361
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/94 (25%), Positives = 34/94 (36%)
Frame = -2
Query: 370 KYGKTHAQDAGSSSLSAHEAHCNTRACVARSPPRRSSFAT**AIALLSVSKTLPSALSNA 191
K+G + SSS S+ +H PP RS LLSV P A
Sbjct: 87 KHGHNPLRSIFSSSSSSSSSHHPRVRLQISLPPSRSEVVAV-VDWLLSVGIVSPVTKETA 145
Query: 190 GTLPAGNFFKKFSVLLVSPNTKSGATFTFAPEYC 89
G L ++ + + +P K+G YC
Sbjct: 146 GALYHQQLSRQLADYIRTPLEKAGGMMALVDVYC 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,651,868
Number of Sequences: 37544
Number of extensions: 467636
Number of successful extensions: 1280
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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