Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I04
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 73 1e-13
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 56 2e-08
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical pr... 31 0.53
L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical pr... 29 3.8
L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66516-7|CAA91362.2| 494|Caenorhabditis elegans Hypothetical pr... 28 5.0
U81043-1|AAC47486.1| 494|Caenorhabditis elegans MEX-1 protein. 28 5.0
AL023828-30|CAA19470.2| 494|Caenorhabditis elegans Hypothetical... 28 5.0
AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical ... 28 5.0
AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical ... 28 6.6
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 73.3 bits (172), Expect = 1e-13
Identities = 53/167 (31%), Positives = 76/167 (45%)
Frame = +3
Query: 33 GVLYTYPENFRAYNALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFESADG 212
G LY +NFR LIAA+ + V +A D + KFP G PAFE G
Sbjct: 3 GKLYGNKDNFRTQKVLIAAKLANKTVTLAGDAAPAD---------KFPLGVTPAFE---G 50
Query: 213 KVLLTESNAIAYYVANDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFNK 392
LL + +I ++ + A +QW +A+ LLPA +V P + F+K
Sbjct: 51 DALLFGAESIGLHLTGT-------SANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDK 103
Query: 393 QNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTLLACF 533
+ VE+ KN +T+LV ER++LAD+ V LL F
Sbjct: 104 KTVEQYKNELNGQLQVLDRVLVKKTYLVGERLSLADVSVALDLLPAF 150
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LLLQILSSTARCLHAFQHVLDPTVPSKLVNVQRWFLPVGHQP 612
L L +S L AFQ+VLD +VNV RWF V +QP
Sbjct: 135 LSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQP 176
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 56.4 bits (130), Expect = 2e-08
Identities = 41/128 (32%), Positives = 59/128 (46%)
Frame = +3
Query: 33 GVLYTYPENFRAYNALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFESADG 212
G LY +NFR LIAA+ + V +A D + KFP G PAFE G
Sbjct: 3 GKLYGNKDNFRTQKVLIAAKLANKTVTLAGDAAPAD---------KFPLGVTPAFE---G 50
Query: 213 KVLLTESNAIAYYVANDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFNK 392
LL + +I ++ + A +QW +A+ LLPA +V P + F+K
Sbjct: 51 DALLFGAESIGLHLTGT-------SANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDK 103
Query: 393 QNVERAKN 416
+ VE+ KN
Sbjct: 104 KTVEQYKN 111
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 535 QHVLDPTVPSKLVNVQRWFLPVGHQP 612
Q+VLD +VNV RWF V +QP
Sbjct: 118 QYVLDANARKSIVNVTRWFRTVVNQP 143
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/102 (30%), Positives = 49/102 (48%)
Frame = +3
Query: 228 ESNAIAYYVANDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFNKQNVER 407
E +A+ + + L + A +QW +A+ LLPA +V P + F+K+ VE+
Sbjct: 24 EGDALLFGAESIGLHLTGTSANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQ 83
Query: 408 AKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTLLACF 533
KN +T+LV ER++LAD+ V LL F
Sbjct: 84 YKNELNGQLQVLDRVLVKKTYLVGERLSLADVSVALDLLPAF 125
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 487 LLLQILSSTARCLHAFQHVLDPTVPSKLVNVQRWFLPVGHQP 612
L L +S L AFQ+VLD +VNV RWF V +QP
Sbjct: 110 LSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQP 151
>Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical
protein F13A7.10 protein.
Length = 254
Score = 31.5 bits (68), Expect = 0.53
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +3
Query: 51 PENFRAYNALI--AAQYS--GANVKVAPDFVFGET--NKTENFLKKFPAGKVPAFESADG 212
P FR Y+ AAQ + A+VK P V K + + K G+VP E A+G
Sbjct: 24 PNTFRIYSMRFCPAAQRALIYASVKKIPSEVININLQQKPDWYFTKNYKGQVPTLEHAEG 83
Query: 213 KVLLTESNAIAYYVANDDL 269
K L+ ES I Y+ DD+
Sbjct: 84 KKLVIESAVIPEYL--DDI 100
>L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical
protein C02D5.3c protein.
Length = 254
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 147 KTENFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANDDL 269
K + F K G+VPA E +GK ++ ES I Y+ DD+
Sbjct: 62 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL--DDI 100
>L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical
protein C02D5.3a protein.
Length = 537
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 147 KTENFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANDDL 269
K + F K G+VPA E +GK ++ ES I Y+ DD+
Sbjct: 345 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL--DDI 383
>Z66516-7|CAA91362.2| 494|Caenorhabditis elegans Hypothetical
protein W03C9.7 protein.
Length = 494
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 15 DQTMAAGVLYTYPENFRAYNALIAA 89
+ +MA+G ++ PEN R Y A+I A
Sbjct: 367 EASMASGKMFGKPENIRTYGAMIRA 391
>U81043-1|AAC47486.1| 494|Caenorhabditis elegans MEX-1 protein.
Length = 494
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 15 DQTMAAGVLYTYPENFRAYNALIAA 89
+ +MA+G ++ PEN R Y A+I A
Sbjct: 367 EASMASGKMFGKPENIRTYGAMIRA 391
>AL023828-30|CAA19470.2| 494|Caenorhabditis elegans Hypothetical
protein W03C9.7 protein.
Length = 494
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 15 DQTMAAGVLYTYPENFRAYNALIAA 89
+ +MA+G ++ PEN R Y A+I A
Sbjct: 367 EASMASGKMFGKPENIRTYGAMIRA 391
>AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical
protein K10F12.4a protein.
Length = 309
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 159 FLKKFPAGKVPAFESADGKVLLTESNAIAYYV 254
+L K P G+VPA E +GKV + ESN I Y+
Sbjct: 138 YLPKSPIGRVPALE-INGKV-VWESNVIVEYL 167
>AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical
protein Y105C5A.1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 114 LSRSPRNIVRRSTHCKRGNFLDKYKVPRQPWFDP 13
LSR+P + + +T K G D K+ QP F P
Sbjct: 259 LSRTPFHFKKEATDDKAGKVKDMLKIDMQPVFTP 292
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,894,727
Number of Sequences: 27780
Number of extensions: 383012
Number of successful extensions: 1067
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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