Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I03
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 97 8e-22
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 52 2e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 52 3e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 48 4e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 47 1e-06
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 46 3e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 44 6e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 1e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 1e-04
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 40 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 3e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 4e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 5e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 7e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 37 0.001
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 35 0.004
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.005
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.005
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.007
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.047
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.062
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.062
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.062
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 31 0.082
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 1.0
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 1.3
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 1.3
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 26 2.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 3.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 4.1
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 25 4.1
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 5.4
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 5.4
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 24 7.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 7.1
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 24 9.4
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 24 9.4
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 97.1 bits (231), Expect = 8e-22
Identities = 38/84 (45%), Positives = 65/84 (77%)
Frame = +2
Query: 92 KLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQNN 271
K+FIGGL++ T D +L++++EQ+GE++D VM+D T RSRGFGF+T+ V+E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 272 RPHKIDGRVVEPKRAVPRDDIKRT 343
+ H +DG++++PKRA+PR++ ++T
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEKT 246
Score = 69.7 bits (163), Expect = 1e-13
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +2
Query: 71 EEPEHMRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHM 250
EE E K+F+GG+ + + F+ Q+G ++D +M D T R RGFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 251 VDEAQNNRPH-KIDGRVVEPKRAVPRDDIK 337
V EA ++P+ I G+ VE KRA P+ ++
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPKASLR 329
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 52.4 bits (120), Expect = 2e-08
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQNN- 271
LF+ G+ R + L++ + ++G + V +M++P TK SRGFGF+++S A +N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 272 RPHKIDGRVVEPKRA 316
+ GRV+ ++A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 52.0 bits (119), Expect = 3e-08
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQNN- 271
LF+ L ++T L F+ G I VV+ +P+T +RG+GF+T+S A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 272 RPHKIDGRVVEPKRAVPRDDIKRTDASATVNK 367
+ K+ GR++ A PR KR++ NK
Sbjct: 67 KNKKLHGRILRLDFATPR---KRSEVDTDQNK 95
Score = 33.5 bits (73), Expect = 0.012
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
+F+ L + + L + Q+G + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 48.4 bits (110), Expect = 4e-07
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEA-QNN 271
+F+G L + +D L + +E++G IV V+ D Q+ RS+G+G++ + A N
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 272 RPHKIDGRVVEPKRAVPR 325
+IDGR+V + PR
Sbjct: 325 GTKEIDGRMVNLDLSNPR 342
Score = 48.4 bits (110), Expect = 4e-07
Identities = 26/98 (26%), Positives = 43/98 (43%)
Frame = +2
Query: 32 YSNMKPSGGGDDYEEPEHMRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRS 211
Y+ + GD EP +F+G L + + L + G+I + + DPQ+ R
Sbjct: 349 YAQQRAGNFGDQLSEPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRL 406
Query: 212 RGFGFITYSRAHMVDEAQNNRPHKIDGRVVEPKRAVPR 325
+GFG++T+S + H I GR + PR
Sbjct: 407 KGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 46.8 bits (106), Expect = 1e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
LF+G LD+ T DA LKE + Q G+I V +M T + +GFGF+ +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 45.6 bits (103), Expect = 3e-06
Identities = 19/93 (20%), Positives = 51/93 (54%)
Frame = +2
Query: 89 RKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQN 268
R+L++ +D++ N+ ++ F+ +G++ V + K + + +GFG++ + + A +
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALS 814
Query: 269 NRPHKIDGRVVEPKRAVPRDDIKRTDASATVNK 367
++ RV+ + PR+ +++T S+ N+
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNR 847
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 44.4 bits (100), Expect = 6e-06
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +2
Query: 74 EPEHMRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMV 253
+P H R LF+G L ND +L + + ++ +V V++D + K +RGFGF+++ +
Sbjct: 26 DPNHFR-LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK-TRGFGFVSFKDSDQF 83
Query: 254 DEAQNNRPHK-IDGRVVEPKRAVPRDDIKRTDAS 352
+A + K I R V+ RA D+K + +
Sbjct: 84 LKAWREKNGKYIGSRPVKLSRAT--SDVKPNEVN 115
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 43.2 bits (97), Expect = 1e-05
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
++IG LD+ N+ + + ++GE VD+ +++D +T +S+GF F+ Y
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.9 bits (89), Expect = 1e-04
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 89 RKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQN 268
R +F+G L + + L ++ G I V +++DP+T +GF +I + VD+A
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 269 NRPHKI-DGRVVEPKRA 316
K+ +GR + RA
Sbjct: 330 LNEKKMPEGRTLRIMRA 346
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 39.9 bits (89), Expect = 1e-04
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +2
Query: 101 IGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQNNRPH 280
+G L + + L +F+ + + +V+ DP T+RSRGFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 281 KIDGRVVEPKRAVPRDDIKRTDAS 352
+ GR V A PR R + S
Sbjct: 156 DLMGRPVRITVAEPRRSFAREERS 179
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 38.7 bits (86), Expect = 3e-04
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVD---EAQ 265
LF+G LD ++ L + + G++V + + RS+G+GF++Y D EA
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 266 NNR 274
NN+
Sbjct: 161 NNQ 163
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.3 bits (85), Expect = 4e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEA 262
++I LD + + + Q+GEI + ++KD Q + RGFGF+ Y+ +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKA 317
Score = 37.9 bits (84), Expect = 5e-04
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEA 262
LFI L +D LK + +G I +M D Q K S+GFGF+ Y+ ++A
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKA 420
Score = 35.9 bits (79), Expect = 0.002
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
L++G LD +A L E + G + + V +D T+RS G+ ++ +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 5e-04
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 71 EEPEHMRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHM 250
EE R +F+ L R L +F+EQ G + D +++D + RS+G ++ +
Sbjct: 234 EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDS 293
Query: 251 VDEA 262
V A
Sbjct: 294 VQAA 297
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +2
Query: 71 EEPEHMRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
E P H +L + + + D +K +E +G+I V + +D Q RS+GFG+I Y
Sbjct: 336 EIPFH--RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.5 bits (83), Expect = 7e-04
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 53 GGGDDYEEPEHMRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFIT 232
G G Y + E R++++G L Y+ LKEF Q G +++ ++ P S+G I
Sbjct: 56 GNGQKYTQQE--RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIE 112
Query: 233 YSRAHMVDEA-QNNRPHKIDGRVV 301
YS A A + K GR+V
Sbjct: 113 YSTAEEARTAIKTLSNQKFMGRLV 136
Score = 33.5 bits (73), Expect = 0.012
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
+++G L + T+D L + + G ++ + +P T RS+GFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 36.7 bits (81), Expect = 0.001
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Frame = +2
Query: 23 TSNYSNMKPSGGGDDYEEPEHMRK-----LFIGGLDYRTND----ATLKEFYEQWGEIVD 175
T++ S PS P +R LF+ L+ ++ AT+K++++QWG ++
Sbjct: 52 TASSSTPIPSSSSSGVLNPSSVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLH 111
Query: 176 VVVMKDPQTKRSRGFGFITYSRAHMVDEAQNNRPHKI-DGRVVEPKRAVPRDDIKRTDA 349
V V+KD R + F+ + +A + + I DGR + +RA I+ + A
Sbjct: 112 VKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSA 167
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.1 bits (77), Expect = 0.004
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
+F+G + Y ++ + E + Q G + ++ DP+T +G+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.005
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 89 RKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEA 262
+ +++G +DY L+ + G + V ++ D T +GF +I +S +V A
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.7 bits (76), Expect = 0.005
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 95 LFIGGLDYRT--NDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQN 268
LF+ LD N L+E + ++G I + P T+ S+G+GF+++S +A N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.3 bits (75), Expect = 0.007
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKE-FYEQWGEIVDVVVMKDPQTKRSRGFGFITYS 238
+F+G L N+ + F ++ +M DPQT SRG+GF+ ++
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
Score = 27.9 bits (59), Expect = 0.58
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQN 268
+F+GGL ++ LK ++ +GEIV V K P K G GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV---KIPPGK---GCGFVQFVNRQSAEIAIN 356
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.5 bits (68), Expect = 0.047
Identities = 10/47 (21%), Positives = 27/47 (57%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
+++G + Y + + + ++Q G + ++ DP++ + +G+GF Y
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.1 bits (67), Expect = 0.062
Identities = 17/83 (20%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSR---AHMVDEAQ 265
L++G L + + ++ ++ Q+G ++ + + ++ +T S+ + FI + A++V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 266 NNRPHKIDGRVVEPKRAVPRDDI 334
+N + + G++++ K +P D +
Sbjct: 167 HN--YLLYGKLLQCK-VIPEDQV 186
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.1 bits (67), Expect = 0.062
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 71 EEPEHMRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
E R ++I GL T+D L + ++G++ + D +T +G+GF +
Sbjct: 290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACF 344
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.1 bits (67), Expect = 0.062
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Frame = +2
Query: 2 HEANLDITSNYSNMKPSGG-GDDYEEPEHMRKLFIGGLDYRTNDATLKEFYEQWGEI-VD 175
+EAN + + +K GG G + +P +++ GL + LKE ++ +
Sbjct: 176 NEAN-GVDKKQNEIKGKGGSGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRAR 234
Query: 176 VVVMKDP-----------QTKRSRGFGFITYSRAHMVDEAQNNRPHKIDGRVVEPKRAVP 322
+ V P + +R RGFGF++++ A E Q+ +++G+ V V
Sbjct: 235 IAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANA----EDQSRAIEEMNGKQVGDLTLVV 290
Query: 323 RDDIKRTDASATVNK 367
+ + R D N+
Sbjct: 291 KSAVFREDKQNDENE 305
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 30.7 bits (66), Expect = 0.082
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
+++G L + T + + + + GEI +++ D TK GF F+ Y
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 1.0
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +2
Query: 92 KLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQNN 271
+LF+G + + + +F++ +G+I+D +M GFGF+ A + N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
Query: 272 RPHK--IDGR-VVEPKRAVPR 325
K + R VVEP R R
Sbjct: 57 FQGKEFMGSRIVVEPARGERR 77
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 1.3
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +2
Query: 95 LFIGGLDYR--TNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQN 268
L++ LD T + L++ + +G I+ ++ P + S+G+GF+ + + A++
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443
Query: 269 NRPHKIDGRVVEPKR 313
++G +V KR
Sbjct: 444 T----LNGMMVGKKR 454
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 1.3
Identities = 8/34 (23%), Positives = 20/34 (58%)
Frame = +2
Query: 83 HMRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVV 184
+ R LF+GG+ + L+ +E++G + +++
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 2.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 323 LVQLFLAQQPF--HLFYEVYYFELHPPYEL*SR**IQNLLISLFED 192
L+ L Q P HL YEV ++H PY +QN+L +L D
Sbjct: 233 LLTTALGQTPINPHLVYEVMKDKVHQPYRASLIPGLQNILATLNPD 278
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 3.1
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +2
Query: 86 MRKLFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITYSRAHMVDEAQ 265
+R L++ G L +E +G ++ + P+T+ SR F F+ Y + ++A
Sbjct: 6 LRTLYVTGFRDGMRARELAYEFEPFGPLIRCDI-PIPRTRTSRPFAFVEYEDSRDAEDAY 64
Query: 266 NNRPHKIDGRVVE 304
+++ GR +E
Sbjct: 65 ----YEVHGRRLE 73
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 89 RKLFIGGLDYRTNDATLKEFYEQWGEI 169
R ++IG D LKE +E++GEI
Sbjct: 414 RNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 310 FWLNNPSIYFMRSI-ILSFIHHMSSRVGDKSKTS*SLCLRIFHYNNIYNFSPLFIK 146
F+ ++P +Y + ++ I S ++ ++ D S ++ FH+ N++ F+PL K
Sbjct: 270 FYEHSPILYDITAVPIWSKVNQGLIKMYDVEVLSKYPVVQHFHFGNLFPFNPLVAK 325
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 307 WLNNPSIYFMRSIILSFIHHMSSRV 233
W +N S++ +II+SF H M V
Sbjct: 329 WRDNASLFNYAAIIISFNHQMIPHV 353
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 252 WMKLKIIDLIK*MEGLLSQKELYQEM 329
W KL+ +DL K +EG + + +Y+ +
Sbjct: 267 WYKLEPLDLTKSLEGEIKVETIYEHI 292
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 95 LFIGGLDYRTNDATLKEFYEQWGEIVDVVVMKDPQTKRSRGFGFITY 235
LFI L ++ T +E Y+ +G V ++ T ++RG F+ Y
Sbjct: 14 LFIKNLSFKI---TAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVY 57
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 310 FWLNNP-SIYFMRSIILSFIHHMSSRVGDKSKTS*SLCLRIF 188
FW++N + I+LSF +++G T S+ LR+F
Sbjct: 684 FWMSNEVTSVNCTGIVLSFCCDNLAKIGSGQSTRVSVLLRLF 725
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 5 EANLDITSNYSNMKPSGGGDDYEE 76
EAN D SN S+ P G G + +
Sbjct: 368 EANEDAQSNVSDESPKGEGSSHSD 391
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 137 LKEFYEQWGEIVDVVVMKDPQTKRSRGF 220
L+ FY+ W EI+ V + + RGF
Sbjct: 814 LELFYQPWFEIIKTVGENEEKDSAFRGF 841
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,154
Number of Sequences: 5004
Number of extensions: 31018
Number of successful extensions: 137
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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