Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I01
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    28   1.0  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    28   1.0  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    26   3.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   3.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.4  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   7.1  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   7.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 358 IPNPSSITSPDMT*TFDSKKP 296
           + NPSS+TSP  + + D KKP
Sbjct: 36  LKNPSSLTSPSSSTSVDKKKP 56


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 264 ACFDRLRTERPGFFESKVHVI--SGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDD 437
           A  +RL +  P    S  ++I  +  V E   G+       L+   + I+H+AA V +  
Sbjct: 682 AAKERLISLVPSLRISSENIIVWAAHVEEIRFGLDDAKWEFLVENVSRIYHMAAEVHWMK 741

Query: 438 PLKFAVKLNLLGTKQIVDLA 497
             +     N+LGTK +++L+
Sbjct: 742 SYQELRPANVLGTKTVLELS 761


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 186 LDRIYLLLRTKRGVNPEE 239
           LDR+ L+L TKR +NP++
Sbjct: 504 LDRVMLMLNTKRIMNPKD 521


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 75   VSQRYHVTSLVKLYLLPEDQVL*GSVLVEKL 167
            +  R H+  L+K+Y   +D ++  SV VE++
Sbjct: 1287 IKARQHLNDLLKIYSTIDDNLIFSSVFVEEI 1317


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 478  FVPSKFNFTAN 446
            F+PSKF+FTAN
Sbjct: 1189 FIPSKFHFTAN 1199


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 185 FGQNLFTPENKTWSES 232
           +G+N F P+ K WS+S
Sbjct: 245 WGENYFNPKTKKWSKS 260


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 185 FGQNLFTPENKTWSES 232
           +G+N F P+ K WS+S
Sbjct: 245 WGENYFNPKTKKWSKS 260


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -1

Query: 364  ADIPNPSSITSPDMT*TFDSKKPGLSVLSLSKQAVEYSCV-NLSSGFTPRFVLRSK*ILS 188
            A++P PS +TSP ++ T   +   +S  S S   +  S V +  S  T  F   S  I+ 
Sbjct: 3792 AELPTPSRMTSPSLSETI-PQSSSISEASTSNPNILSSTVLSFDSTITNSFTTASTSIMK 3850

Query: 187  KSGQE*SSF 161
             +    +S+
Sbjct: 3851 TTSLNSNSY 3859


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,969
Number of Sequences: 5004
Number of extensions: 44481
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)