Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_I01
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 72 3e-13
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949... 71 6e-13
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 67 1e-11
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 66 2e-11
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 65 4e-11
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 63 2e-10
04_03_0545 + 16996340-16996418,16998039-16998142,16999796-169999... 51 7e-07
07_03_0075 - 13096386-13096554,13096642-13096766,13096851-130971... 48 5e-06
08_01_0981 + 9915225-9916748 33 0.11
05_03_0482 - 14568108-14568284,14568912-14569970,14570532-145712... 31 0.44
01_06_0809 - 32137202-32138128,32138247-32138631,32139503-321396... 28 5.4
07_03_0076 - 13123676-13123720,13124611-13124714,13124813-13124891 27 7.2
06_03_0557 + 22133604-22134506 27 7.2
11_04_0325 + 16395124-16396794 27 9.5
03_05_1166 - 30876802-30876899,30877233-30878685 27 9.5
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 71.7 bits (168), Expect = 3e-13
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Frame = +3
Query: 144 GSVLVEKLLYSCPDLDRIYLLLRTKRGVNPEER-LTQLYSTACFDRLRTER----PGFFE 308
G +LVEK+L P++ ++YLL+R + EER LT++ FD LR + F +
Sbjct: 25 GKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGKGLFDVLREQYGAGFNSFIK 84
Query: 309 SKVHVISGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDDPLKFAVKLNLLGTKQIV 488
K++ + GDVM + G+ + + + L + +II + AA+ F + A+ N G +
Sbjct: 85 EKIYALPGDVMHENFGLESYEVLQLSQKVDIIVNGAATTNFMERYDVALATNAAGVMHLC 144
Query: 489 DLAKCVVNLSALVHV 533
AK NL ++HV
Sbjct: 145 QFAKQCDNLKMVLHV 159
>04_03_0539 +
16892822-16892900,16894004-16894107,16894718-16894917,
16896078-16896178,16897546-16897735,16898377-16898458,
16899374-16899501,16899846-16900026
Length = 354
Score = 70.9 bits (166), Expect = 6e-13
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Frame = +3
Query: 144 GSVLVEKLLYSCPDLDRIYLLLRTKRGVNPEER-LTQLYSTACFDRLRTER----PGFFE 308
G +LVEK+L P++ ++YLL+R + EER LT++ FD LR + F +
Sbjct: 25 GKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGNGLFDVLREQYGAGFHSFIK 84
Query: 309 SKVHVISGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDDPLKFAVKLNLLGTKQIV 488
K++ + GDV + G+ + D + L + +II + AA+ F + A+ N G +
Sbjct: 85 EKIYALPGDVTHENFGLESYDILQLSQKVDIIVNGAATTNFMERYDVALATNTTGVVHLC 144
Query: 489 DLAKCVVNLSALVHV 533
AK NL ++HV
Sbjct: 145 QFAKQCDNLKMVLHV 159
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 66.9 bits (156), Expect = 1e-11
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Frame = +3
Query: 144 GSVLVEKLLYSCPDLDRIYLLLRTKRGVNPEERL-TQLYSTACFDRLRTER----PGFFE 308
G +LVEK+L PD+ +IYL +R ++R+ T++ F L+ + F +
Sbjct: 25 GKILVEKILRVQPDVRKIYLPVRAVDAATAKQRMQTEVIGKELFGLLKEQHGKGFQSFID 84
Query: 309 SKVHVISGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDDPLKFAVKLNLLGTKQIV 488
KV ++ D+M LG+ L NII + AA+ F + A+ +N++G K +
Sbjct: 85 EKVVPLAADMMHQNLGLEESTLQELAKDLNIIVNGAATTNFYERYDVALDVNVMGVKYLC 144
Query: 489 DLAKCVVNLSALVHV 533
LAK NL +HV
Sbjct: 145 QLAKKCANLEVFLHV 159
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 65.7 bits (153), Expect = 2e-11
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Frame = +3
Query: 144 GSVLVEKLLYSCPDLDRIYLLLRTKRGVNPEER-LTQLYSTACFDRLRTERPG----FFE 308
G + VEK+L PD+ +I+LL+R + E+R L ++ F LR F +
Sbjct: 436 GKIFVEKILRIQPDVKKIFLLVRAADTSSAEQRVLNEVIGNELFGPLRENYGSNFYSFMK 495
Query: 309 SKVHVISGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDDPLKFAVKLNLLGTKQIV 488
K+ ++GD++ + LG+ + + + L + +II + AA+ F + ++ N+LG K +
Sbjct: 496 EKISPLAGDIINENLGLESLEILKLSKEIDIIVNGAATTNFYERYDVSLASNVLGAKYVC 555
Query: 489 DLAKCVVNLSALVHV 533
AK NL +H+
Sbjct: 556 KFAKKCANLKMFLHI 570
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 64.9 bits (151), Expect = 4e-11
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Frame = +3
Query: 144 GSVLVEKLLYSCPDLDRIYLLLRTKRGVNPEERLTQLYSTACFDRLRTERPG-----FFE 308
G VLVEK+L PD+ ++YLL+R + R+ + ++ E+ G F E
Sbjct: 25 GKVLVEKILRVQPDVKKLYLLVRANDVESATRRVQDEVTGKEIFQVLKEKHGDGFESFVE 84
Query: 309 SKVHVISGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDDPLKFAVKLNLLGTKQIV 488
KV ++GD++ + LG+ + L ++ +II + AA+ F + A N+LG K I
Sbjct: 85 EKVCTLAGDIIYENLGLDSAKLTELSNEIDIIVNGAATTNFYERYDVAFDSNVLGAKNIC 144
Query: 489 DLAKCVVNLSALVHV 533
+ AK L L+HV
Sbjct: 145 EFAKKCTKLKMLLHV 159
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Frame = +3
Query: 144 GSVLVEKLLYSCPDLDRIYLLLRTKRGVNPEERL-TQLYSTACFDRLRTERPG-----FF 305
G +LVEK+L PD+ +IYLL+R + +R+ +++ T F ++ E+ G F
Sbjct: 30 GKILVEKILRVQPDVKKIYLLVRAIDQASANQRVQSEVTETELFSVVK-EKHGKGFSRFI 88
Query: 306 ESKVHVISGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDDPLKFAVKLNLLGTKQI 485
E KV ++GD++ D LG+ L ++I + AA+ F ++ +N+LG K +
Sbjct: 89 EEKVVALAGDIIYDDLGLDPPLLQHLADNLDVIVNGAATTNFYGRYDVSLDVNVLGVKHL 148
Query: 486 VDLAKCVVNLSALVHV 533
LAK L +HV
Sbjct: 149 CQLAKKCRGLKVFLHV 164
>04_03_0545 +
16996340-16996418,16998039-16998142,16999796-16999995,
17000186-17000228
Length = 141
Score = 50.8 bits (116), Expect = 7e-07
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Frame = +3
Query: 150 VLVEKLLYSCPDLDRIYLLLRTKRGVNPEER-LTQLYSTACFDRLRTERPGFFES----K 314
+LVEK+L PD+ ++YLL+R +ER LT++ FD LR + F S K
Sbjct: 27 MLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLTEVVGKGLFDVLREQHGASFHSFIKEK 86
Query: 315 VHVISGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDDPLKFAVKLNLL 470
V + GD+ G+ + + L +II + AA+ F + K LNLL
Sbjct: 87 VCPLPGDITHQNFGLGNSEILRLSQDVDIIVNGAATTNFME-RKVNETLNLL 137
>07_03_0075 -
13096386-13096554,13096642-13096766,13096851-13097117,
13097506-13097587,13097956-13098172,13098260-13098360,
13098425-13098627,13099261-13099334,13100246-13100429
Length = 473
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Frame = +3
Query: 273 DRLRTERPGFFESKVHVISGDVMEDGLGIS----AEDRILLISQTNIIFHVAASVRFDDP 440
++ +T +F KV ++GDV GI AED + +TNII H+AA+V F +
Sbjct: 98 EKYQTHFSSWFWDKVFPLAGDVSLKNFGIGDARLAED---IRKETNIIVHMAATVNFAER 154
Query: 441 LKFAVKLNLLGTKQIVDLAKCVVNLSALVHV 533
A+ +N +G K ++D A NL ++ V
Sbjct: 155 YDTALAINTMGVKHMIDFASKCTNLELVLLV 185
>08_01_0981 + 9915225-9916748
Length = 507
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 NPEERLTQLY-STACFDRLRTERPGFFESKVHVISGDVMEDGLGISAEDRILL 383
+PE+ + +Y A F+ LR PG+ E K V++ DVM G + A D +L+
Sbjct: 350 SPEDTKSLVYLHAALFETLRLYPPGWIERKT-VVADDVMPSGHEVRAGDAVLI 401
>05_03_0482 -
14568108-14568284,14568912-14569970,14570532-14571236,
14571376-14571656,14571748-14571769
Length = 747
Score = 31.5 bits (68), Expect = 0.44
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 72 SVSQRYHVT-SLVKLYLLPEDQVL*GSVLVEKLLYSCPDLDRIYLLLRTKRGVN------ 230
S++Q+ V +L K ++ P D + V EKL+ SC D D L L K N
Sbjct: 386 SITQQSEVMEALFKDFVHPGDIIQNFIVQYEKLVQSCLDRDDKQLFLTVKTDANLWSKFP 445
Query: 231 PEERLTQLYSTACFDRLR 284
EE+ ++ Y+ A F+R +
Sbjct: 446 MEEQASKFYTRAIFERFQ 463
>01_06_0809 -
32137202-32138128,32138247-32138631,32139503-32139607,
32139737-32139770,32139856-32140098,32140187-32140247
Length = 584
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 204 VNKFCPNLDRSRVVSLLTHFPIKPDPPVIN 115
+ K CPNLDR + + PI PD +IN
Sbjct: 178 MRKLCPNLDRDDSLDTVLEVPI-PDEMLIN 206
>07_03_0076 - 13123676-13123720,13124611-13124714,13124813-13124891
Length = 75
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 66 LESVSQRYHVTSLVKLYLLPEDQVL*GSVLVEKLLYSCPDLDRIYLLLRTKRGVNPEERL 245
L V++R+H ++ L+ +LVEK+L P + R+YLL+R V+ R+
Sbjct: 3 LAGVAERFHSRTV----LITGATGFIAKLLVEKILRLQPGVKRLYLLVRAADQVSANRRV 58
>06_03_0557 + 22133604-22134506
Length = 300
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 66 LESVSQRYHVTSLVKLYLLPEDQVL*GSVLVEKLL 170
L V +HV+ L K +PE+QV G++ +EK L
Sbjct: 212 LADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNL 246
>11_04_0325 + 16395124-16396794
Length = 556
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 240 RLTQLYSTACFDRLRTERPGFFESKVHVISGDVMEDGLGISAEDRI 377
R+ L++ C + +R P ++SK H + DV+ DG + DR+
Sbjct: 375 RMRVLHAALC-ETMRLYPPVAWDSK-HAAADDVLPDGTAVGRGDRV 418
>03_05_1166 - 30876802-30876899,30877233-30878685
Length = 516
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 310 DSKKPGLSVLSLSKQAVEYSCVNLSSGFTPRFVLRSK 200
+S PGL V L+ +A+E+ ++ SG T R + K
Sbjct: 96 ESSSPGLMVPDLAIRAIEFDKIDEISGVTARVEVADK 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,988
Number of Sequences: 37544
Number of extensions: 268319
Number of successful extensions: 587
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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