Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_I01
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...   126   1e-29
Z36753-6|CAA85335.1|  103|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF292050-1|AAG41146.1|  103|Caenorhabditis elegans 2I146 protein.      28   4.8  
AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score =  126 bits (304), Expect = 1e-29
 Identities = 58/130 (44%), Positives = 91/130 (70%)
 Frame = +3

Query: 144 GSVLVEKLLYSCPDLDRIYLLLRTKRGVNPEERLTQLYSTACFDRLRTERPGFFESKVHV 323
           G V+VEKLL++  D+  IYL++RT++G NP+ERL+ L     F+R+R E+P  F+ K+  
Sbjct: 24  GKVIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGLLHDPLFNRIRQEKPEAFD-KLKA 82

Query: 324 ISGDVMEDGLGISAEDRILLISQTNIIFHVAASVRFDDPLKFAVKLNLLGTKQIVDLAKC 503
           I GD+M + LG+  ED +L+    N++ H AA+V+FD+ L+ AV +N++GTK+I+DL   
Sbjct: 83  IGGDMMVENLGMDPEDVMLIRDNVNVVIHSAATVKFDEHLRAAVTMNVIGTKRIIDLCHQ 142

Query: 504 VVNLSALVHV 533
           + +L  LVHV
Sbjct: 143 IKDLKVLVHV 152


>Z36753-6|CAA85335.1|  103|Caenorhabditis elegans Hypothetical
           protein T09A5.7 protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 210 RTKRGVNPEERLTQLYSTACFDRLRTERP 296
           R +  VNP ERL  +Y     +RL T+RP
Sbjct: 37  RHQYAVNPCERLHDVYKRCVEERLATQRP 65


>AF292050-1|AAG41146.1|  103|Caenorhabditis elegans 2I146 protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 210 RTKRGVNPEERLTQLYSTACFDRLRTERP 296
           R +  VNP ERL  +Y     +RL T+RP
Sbjct: 37  RHQYAVNPCERLHDVYKRCVEERLATQRP 65


>AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.8 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +3

Query: 258 STACFDRLRTERPGFFESKVHVISGDVMEDGLGISAEDRIL--LISQTNIIFHVAASVRF 431
           ST+C   +    P FF+  + V       DG G+ A   +L  + S  +I    A SV  
Sbjct: 25  STSCTFEIGDLNPDFFQEMLGVSKPTQNADGYGVDAPYWLLESVRSSFSIQLPKAYSVNM 84

Query: 432 DDPLKF-AVKLNLLGTKQ 482
            + L   + KLNL G +Q
Sbjct: 85  QNVLNADSKKLNLSGLQQ 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,172,210
Number of Sequences: 27780
Number of extensions: 240856
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)