Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_H24
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300... 94 7e-20
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264... 47 8e-06
01_03_0165 + 13356499-13356834,13356840-13357046,13357206-13357544 29 1.8
12_01_0479 - 3759699-3759865,3760487-3760586,3761031-3761360 29 3.1
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 5.5
06_03_0389 - 20273637-20274383,20274488-20274979 27 7.2
06_03_0387 - 20244279-20245025,20245130-20245621 27 7.2
04_04_0074 - 22537559-22537951,22539143-22539271,22540410-225405... 27 9.6
>09_06_0129 -
21028528-21028575,21029559-21029654,21029989-21030070,
21030394-21030472,21030946-21031042,21031506-21031593,
21033326-21033687
Length = 283
Score = 93.9 bits (223), Expect = 7e-20
Identities = 48/132 (36%), Positives = 75/132 (56%)
Frame = +2
Query: 26 NSPLYIGGVGNDTSTDNELSRQWLVHTALDALEERLAXXXXXXXXXXXXXXXXDLRDLYL 205
N+PLY+ T D+ L +VH +LD ++ER+ L + +L
Sbjct: 151 NNPLYLQSF---TEADDALKLHHVVHCSLDVIDERVNNPKRNAPA---------LNETFL 198
Query: 206 GLLYATDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYADAICNPF 385
GLLY T+ +K+YGY+TNT++K ++VT+ +++DA+ R R+ HA Y DA+ NPF
Sbjct: 199 GLLYPTENYKVYGYLTNTKVKFIMVTTDL-----DVKDADARNFFRKFHAAYVDAVSNPF 253
Query: 386 HLPGDQITSLKF 421
H+PG +I S F
Sbjct: 254 HVPGKKIASRSF 265
>04_04_0426 +
25125590-25125670,25126171-25126256,25126423-25126471,
25126547-25126675,25126973-25127055,25127791-25127959,
25128038-25128103
Length = 220
Score = 47.2 bits (107), Expect = 8e-06
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 1/144 (0%)
Frame = +2
Query: 8 AVIGKDNSPLYIGGVGN-DTSTDNELSRQWLVHTALDALEERLAXXXXXXXXXXXXXXXX 184
A++ K++ P+Y VG+ D Q+++H ALD +++ LA
Sbjct: 8 AIVSKNDIPIYEAEVGSAPKKEDLAYQHQFILHAALDVVQD-LAWSTNAMFLKSVDR--- 63
Query: 185 DLRDLYLGLLYATDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYA 364
DL + + + + ++ + T + +L+ S S G +++ + +H LY
Sbjct: 64 -FNDLVVSVYFYLYNNIVF-FNLMTHARFMLLHDSRSEDG-------IKSFFQEVHELYI 114
Query: 365 DAICNPFHLPGDQITSLKFDKQVK 436
NP +LPG +ITS FD +V+
Sbjct: 115 KIFLNPLYLPGSRITSSHFDTKVR 138
>01_03_0165 + 13356499-13356834,13356840-13357046,13357206-13357544
Length = 293
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 54 AMIRALTTSFRASGSSTLH*TPSKSDLHQLTATTRDPIRTLRALIYETFI*VCCTLRIPI 233
++I++ TT A + TP+ ++L Q+ ++ AL T + C TLRI I
Sbjct: 208 SLIKSATTQRSARPMGSSSGTPTMANLDQIHYLVGGSAFSIDALESPTLLVRCKTLRIAI 267
Query: 234 KFMV 245
+FM+
Sbjct: 268 QFML 271
>12_01_0479 - 3759699-3759865,3760487-3760586,3761031-3761360
Length = 198
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 164 WIPCCCC*LMQVALRG-RLMQCGRATGAKARC 72
W+P CC + R R+M+ ATG + RC
Sbjct: 34 WLPLLCCAVAVFRFRRVRMMRSSAATGGRRRC 65
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 430 LFIEFQRSYLISRKMEWITNGISI 359
L + F S L+ ++EW+T+G+S+
Sbjct: 278 LHMTFTNSILMEERLEWLTDGVSL 301
>06_03_0389 - 20273637-20274383,20274488-20274979
Length = 412
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 197 GLVDQCA*RSNWIPCCCC*LMQVALRGRLMQCGRATGAKARCQCSYHCQ 51
G D +SNWI ++++ +G+L G A +K C Y C+
Sbjct: 112 GSTDLALFKSNWIEIMRLESLEISGKGKLDGQGAAVWSKNSCAKKYDCK 160
>06_03_0387 - 20244279-20245025,20245130-20245621
Length = 412
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 197 GLVDQCA*RSNWIPCCCC*LMQVALRGRLMQCGRATGAKARCQCSYHCQ 51
G D +SNWI ++++ +G+L G A +K C Y C+
Sbjct: 112 GSTDLALFKSNWIEIMRLESLEISGKGKLDGQGAAVWSKNSCAKKYDCK 160
>04_04_0074 -
22537559-22537951,22539143-22539271,22540410-22540541,
22540546-22540996,22541301-22541443
Length = 415
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 87 ASGSSTLH*TPSKSDLHQLTATTRDPIRTLRALI 188
ASG++ KSD QLT + DPI T +I
Sbjct: 57 ASGNAVKSEQLGKSDERQLTPSPNDPIHTTNGII 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,375
Number of Sequences: 37544
Number of extensions: 239473
Number of successful extensions: 591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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