Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H24
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    34   0.075
AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.     32   0.30 
AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans hom...    32   0.30 
AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical...    27   8.6  

>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +2

Query: 221 TDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYAD-AICNPFHLPG 397
           T   K++   + T +K V++TS+ S   ++       + L +++ LY D A+ NPF+   
Sbjct: 144 TTQFKLFCLQSRTGVKFVVITSAASNIAAD-------SLLSKMYELYTDFALKNPFYSID 196

Query: 398 DQITSLKFDKQVKNIM 445
             I + KFD+ +K ++
Sbjct: 197 MPIRAQKFDEAIKTLL 212


>AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 15  SAKIIHRYTSAVLAMIRALTTSFRASGSSTLH*TPSKSDLHQLTATTRDPIR 170
           S  I H+Y +  L   RALTT+   S SS  + T S S       TT D ++
Sbjct: 39  SHNIYHQYATPYLQSGRALTTAHNTSSSSAGNSTSSSSSSSNYRNTTHDSLQ 90


>AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans
           homeobox protein 17 protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 15  SAKIIHRYTSAVLAMIRALTTSFRASGSSTLH*TPSKSDLHQLTATTRDPIR 170
           S  I H+Y +  L   RALTT+   S SS  + T S S       TT D ++
Sbjct: 39  SHNIYHQYATPYLQSGRALTTAHNTSSSSAGNSTSSSSSSSNYRNTTHDSLQ 90


>AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical
           protein T27B7.2 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 107 QCGRATGAKARCQCSYHCQHRRCI 36
           +C   TG KARC C   C+ RRC+
Sbjct: 80  KCQSKTGNKARCFCR-PCRLRRCL 102


>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
           protein Y57A10A.15 protein.
          Length = 1072

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +2

Query: 212 LYATDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYADA 370
           L+ T T++  G+V  T IK ++     +P+G  +  A+V +  + L ALY DA
Sbjct: 657 LWVTLTNQSTGHVIGTGIKAMV----QAPAGYRLVGADVDSQEQWLAALYGDA 705


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,474,843
Number of Sequences: 27780
Number of extensions: 217991
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)