Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H23
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.30 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.30 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.53 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.6  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 250 DTKVLNLNRTLFWNFLDGYNFTSSLFELL---QLPQEIPETRFCHN 122
           +TK+++ N   + N+ + YN     + ++   Q+P  +P   +C N
Sbjct: 300 ETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 345


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 250 DTKVLNLNRTLFWNFLDGYNFTSSLFELL---QLPQEIPETRFCHN 122
           +TK+++ N   + N+ + YN     + ++   Q+P  +P   +C N
Sbjct: 311 ETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 356


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 319 TYTQVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNF 206
           TYT  T+  ++IV      +TQ D ++ N  + + + F
Sbjct: 500 TYTYDTICQLNIVHYGIGFITQSDIELANTFKAIIYGF 537


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 2   HEEMKAKGELKEYEVIGRKLPSESEP 79
           HE+      L  Y V+ R + +ESEP
Sbjct: 23  HEKRLLNDLLDTYNVLERPVGNESEP 48


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 2   HEEMKAKGELKEYEVIGRKLPSESEP 79
           HE+      L  Y  + R + +ESEP
Sbjct: 54  HEKRLLNELLSSYNTLERPVANESEP 79


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 2   HEEMKAKGELKEYEVIGRKLPSESEP 79
           HE+      L  Y  + R + +ESEP
Sbjct: 54  HEKRLLNELLSSYNTLERPVANESEP 79


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 170 FKKTTGEIVSIKEIPEKSPVKI 235
           +KK    I++I++IP   PV I
Sbjct: 349 YKKLYYNIINIEQIPVPVPVPI 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,791
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)