Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H20
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    28   0.19 
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    27   0.33 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   0.76 
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    24   3.1  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    23   4.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   4.0  
SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S...    23   5.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    23   5.3  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    23   7.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    22   9.3  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    22   9.3  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    22   9.3  
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    22   9.3  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 132 RTLPIGQDIQPTRDLS 179
           R+  IGQDIQP RDLS
Sbjct: 32  RSFGIGQDIQPKRDLS 47


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 82  HHKWTPYFSIFRFLHLNGF*LSDYGHE 2
           H  ++PY+ +F  L+LNG  L  Y  E
Sbjct: 382 HSSYSPYYVVFDILYLNGKSLVKYSLE 408


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 148 PIGKVLLFSSRIEGYNSGSTLLHHKWT 68
           P+  VL    R+  ++S S +LH KWT
Sbjct: 99  PLLTVLTNRHRVYFFSSSSRVLHQKWT 125


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 100 NCNPLFEKRTTELCLLARTSSQP 168
           +CNP    +T  +C +  T SQP
Sbjct: 168 DCNPKEPPKTYPVCTIRSTPSQP 190


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 173 ISGWLDVLANRQSSVVLFSNRGLQFW 96
           +S W  V+ N  ++V   SN   Q W
Sbjct: 330 VSDWFRVMTNLNATVHFVSNSPWQLW 355


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 6/30 (20%), Positives = 14/30 (46%)
 Frame = +1

Query: 52   KWKSMASTCGEAKLTQNCNPLFEKRTTELC 141
            +W+S    CG + +  +C  + +    + C
Sbjct: 2567 EWRSQCRACGNSNVCSDCVSMLKDTNIKTC 2596


>SPAC19B12.09 |srp14||signal recognition particle subunit
           Srp14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 79  GEAKLTQNCNPLFEKRTTELCLLARTSS 162
           G   L+Q CNP+ E   +   +L R  S
Sbjct: 25  GSVYLSQKCNPVDEGEGSSASVLIRAKS 52


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 349

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 2  FVAVITELKSIQVQKPKNGKVWR 70
          F+A+I    ++ +  P NG  W+
Sbjct: 7  FLALIASALAMSINSPTNGDTWQ 29


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 169 LVGWMSWPIGKVLLFSSRI 113
           +VGW+   +GK  LFS ++
Sbjct: 197 MVGWLCDTVGKSSLFSYKV 215


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 109 GYNSGSTLLHHKWTPYFSIFRFLHL 35
           GY + S+   H ++PY +IF+ + L
Sbjct: 407 GYFAMSSFKGHHFSPYSAIFKCVSL 431


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 70  STCGEAKLTQNCNPLFEKRTTELCLLARTSSQPE 171
           S   + KL  +  PLF  + T L L    + +PE
Sbjct: 264 SVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 157 MSWPIGKVLLFSSRIEGYNSGSTLL 83
           ++W +    +   RI+ YN+G+ LL
Sbjct: 118 LAWALAANSISIMRIDSYNTGALLL 142


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +3

Query: 108 PSIREENNRTLPIGQD 155
           P+++++ N+TLPI Q+
Sbjct: 33  PALQDKTNQTLPIHQN 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,796
Number of Sequences: 5004
Number of extensions: 13276
Number of successful extensions: 38
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)