Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_H20
         (179 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF527974-1|AAO16090.1|  245|Homo sapiens prostate-specific antig...    29   3.5  

>AF527974-1|AAO16090.1|  245|Homo sapiens prostate-specific antigen
           protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 145 IGKVLLFSSRIEGYNSGSTLLHHKWTPYFSIFRFLHL 35
           IG+   F+S +E      ++   +W PY +IFRF H+
Sbjct: 54  IGQNSSFNSWMESQFLHPSMEPGQWLPYITIFRFTHI 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,723,643
Number of Sequences: 237096
Number of extensions: 503831
Number of successful extensions: 4583
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4583
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)