Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_H19
(298 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 2.4
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 2.4
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 24 4.2
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 5.5
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 23 7.3
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 23 7.3
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 23 9.6
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 23 9.6
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 23 9.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 9.6
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 2.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 67 MITQRDHDFIVNLDQRGQKDLPDKNPDACADVFLNLLT 180
++ H + L G K+ NPD AD+F + LT
Sbjct: 286 VLAMPSHTSCIQLAACGPKETLPMNPDLPADLFTSCLT 323
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 2.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 79 RDHDFIVNLDQRGQKDLPDKNPDACADVFLNLLTHISKDHTIQYIL 216
+ H LD++ + + K DV++ L T+I + IQ+ L
Sbjct: 310 KHHSLYNELDEQEELESNVKEEGTMVDVWMQLCTYIDSHNPIQFHL 355
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 24.2 bits (50), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 298 ARCYQNTLTHGISSHGIYLLKEYR 227
+RC T ISS+G LL EY+
Sbjct: 37 SRCVPGASTREISSYGDNLLHEYK 60
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 183 HQQGPYYPVYPCTNRRY 233
H GP PVYP + R+
Sbjct: 665 HDHGPLLPVYPDVDSRF 681
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 23.4 bits (48), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 178 THISKDHTIQYILVLIDDILSEDKSRVKIFRESKYSGNIW 297
T + K Y + L++D + E R E+ YSG IW
Sbjct: 10 TDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIW 49
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 23.4 bits (48), Expect = 7.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 91 FIVNLDQRGQKDLPDKNPDACADVFLNLLTHISKDHTIQYILVLIDDILSEDK 249
+++ L Q P K + A++ ++ H+S D+T L DIL D+
Sbjct: 205 YLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILERDE 257
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 160 VFLNLLTHISKDHTIQYILVLIDDILSEDKSRV 258
+F+ L I K+H+I+ L D+L E K RV
Sbjct: 5 IFIQLQDQIDKEHSIREKLTAEVDLLDE-KLRV 36
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 23.0 bits (47), Expect = 9.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 97 VNLDQRGQKDLPDKNPDACADVFLNLLTHISKDH--TIQYILV---LIDDILSEDKSRVK 261
VN + G NP C V+LN + S+D T+Q + V L+ +D++R+
Sbjct: 548 VNYQKFGDNFSEIGNPFCCDWVYLNEMVKASRDEDKTLQLVRVQVQLVQRGSLQDRARIY 607
Query: 262 IFRESKYS 285
+ + S
Sbjct: 608 CLSDDELS 615
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 162 FPQSSYTHQQGPYYPVYPCTNRRYSFRR*IPCE 260
+P Q GPY V PC+ YS P +
Sbjct: 392 YPLIDEVIQPGPYKEVLPCSYLCYSLASSCPLD 424
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 23.0 bits (47), Expect = 9.6
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = -2
Query: 204 DSMVLADVCKKIEENISTCIWV 139
+ +L+ + +K++ I TC+W+
Sbjct: 142 EKKILSRIRRKLDLRIITCLWI 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,931
Number of Sequences: 5004
Number of extensions: 21097
Number of successful extensions: 43
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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