Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_H19
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647... 57 2e-09
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 30 0.28
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 29 0.49
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 28 1.1
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084... 28 1.1
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 28 1.5
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 28 1.5
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214... 27 2.0
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 27 2.0
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270... 27 2.6
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644 27 3.5
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 27 3.5
10_04_0010 - 7487455-7489490,7489569-7489980 27 3.5
10_02_0059 + 4785858-4786988 27 3.5
09_02_0555 - 10588685-10592038 27 3.5
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 27 3.5
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 27 3.5
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 27 3.5
04_01_0187 - 2153546-2154520,2154581-2155858 27 3.5
03_02_1029 - 13488535-13493037 27 3.5
03_02_1026 + 13313672-13313876,13341211-13342005,13363815-133638... 27 3.5
11_01_0176 - 1403284-1403553,1404313-1404468,1404569-1404787,140... 26 6.0
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 26 6.0
12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131... 25 8.0
01_06_0746 - 31636024-31641396 25 8.0
>07_03_0822 +
21762662-21762767,21763295-21763347,21764639-21764764,
21764960-21765062,21765146-21765222
Length = 154
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/98 (27%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Frame = +1
Query: 4 QIRASEIRQTQINWQSYLQGQMITQRDHDFIVNLDQRGQKD---LPDKNPDACADVFLNL 174
++ ++ + I W+SY+ ++I+ + D + + L D++ + VFLN+
Sbjct: 48 ELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNI 107
Query: 175 LTHISKDHTIQYILVLIDDILSEDKSRVKIFRESKYSG 288
L +ISK+ T++Y+L LID++L+ + R +F ++ SG
Sbjct: 108 LRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSG 145
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +3
Query: 24 PPDSNQLAVLPAGSDDHSA*S*FHRQLRSAWSEGF 128
PP LAV P DD A S HR+ RSA S GF
Sbjct: 360 PPPPVALAVSPDDDDDSPARSGGHRRSRSAESVGF 394
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 112 RGQKDLPDKNPDACADVFLNLLTHISKD 195
RG + P P C D+FLNL +S D
Sbjct: 1160 RGNEMYPVAKPSKCFDIFLNLFDFLSND 1187
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 13 ASEIRQTQ-INWQSYLQGQMITQRDHDFIVNLDQRGQKDLPDKNPDACADVFLNLLTHI 186
A E++ + W + ++ Q + F++N + Q+D D NP +L++L H+
Sbjct: 460 AIEVQNIEDFTWLNSSYSPVLKQLESQFMINYYFKTQQDKRDNNPKFQNPKYLSILNHL 518
>08_02_0107 +
12494650-12495270,12507463-12508146,12508325-12508472,
12508493-12508584,12508713-12509426
Length = 752
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 160 VFLNLLTHISKDHTIQYILVLIDDILSEDKS 252
+F+NL+ + ++ ++++V IDDIL +S
Sbjct: 125 IFMNLMNKVFMEYVDKFVVVFIDDILVYSQS 155
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 160 HQHMHLGSYQANPSDHAD 107
HQH H+ Y PSD AD
Sbjct: 778 HQHEHMSHYHMGPSDTAD 795
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 255
F+NL+ + ++ ++++V IDDIL K++
Sbjct: 973 FMNLMNKVFMEYLDKFVVVFIDDILIYSKTK 1003
>04_04_0352 +
24619621-24619757,24620102-24620411,24621022-24621429,
24621773-24622357
Length = 479
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 64 QMITQRDHDFIVNLDQRGQKDLPDKNPDACADVFLNLLTHISKDHTIQYIL 216
+++T +H + + + Q+ + +P V LN+ H K T+Q I+
Sbjct: 177 EVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIV 227
>03_05_0170 +
21482962-21483018,21483133-21483183,21483313-21483500,
21483587-21483671,21483848-21483902,21483998-21484041,
21485045-21485113,21485207-21485307,21485396-21485452,
21485540-21485636
Length = 267
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 100 NLDQRGQKDLPDKNPDACADVFLNLLTHISKDH 198
N++ +GQ DL + AC D+ N L DH
Sbjct: 30 NVEHKGQVDLVTETDKACEDLIFNHLRKHYPDH 62
>02_03_0179 +
16025962-16026143,16026570-16026684,16026852-16027065,
16027346-16027397,16027411-16027696
Length = 282
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 175 LTHISKDHTIQYILVLIDDILSEDKSRVKIFRESKYSG 288
L H+ K+ T Y+ IDD+ +E K +K R Y G
Sbjct: 196 LVHV-KETTSMYLKSAIDDLFAEHKLSLKQVRGQGYDG 232
>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
Length = 581
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKS 252
F+NL+ + ++ ++++V IDDIL +S
Sbjct: 152 FMNLMNKVFMEYLDKFVVVFIDDILIYSQS 181
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 255
F+NL+ + ++ ++++V IDDIL +++
Sbjct: 865 FMNLMNKVFMEYLDKFVVVFIDDILIYSRTK 895
>10_04_0010 - 7487455-7489490,7489569-7489980
Length = 815
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKS 252
F+NL+ + ++ ++++V IDDIL +S
Sbjct: 82 FMNLMNKVFMEYLDKFVVVFIDDILVYSQS 111
>10_02_0059 + 4785858-4786988
Length = 376
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKS 252
F+NL+ + ++ ++++V IDDIL +S
Sbjct: 126 FMNLMNKVFMEYLDKFVVVFIDDILIYSQS 155
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKS 252
F+NL+ + ++ ++++V IDDIL +S
Sbjct: 313 FMNLMNKVFMEYLDKFVVVFIDDILIYSQS 342
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 255
F+NL+ + ++ ++++V IDDIL +++
Sbjct: 355 FMNLMNKVFMEYLDKFVVVFIDDILIYSRTK 385
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKS 252
F+NL+ + ++ ++++V IDDIL +S
Sbjct: 420 FMNLMNKVFMEYLDKFVVVFIDDILVYSQS 449
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 255
F+NL+ + ++ ++++V IDDIL +++
Sbjct: 666 FMNLMNKVFMEYLDKFVVVFIDDILIYSRTK 696
>04_01_0187 - 2153546-2154520,2154581-2155858
Length = 750
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 255
F+NL+ + ++ ++++V IDDIL +++
Sbjct: 12 FMNLMNKVFMEYLDKFVVVFIDDILIYSRTK 42
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKS 252
F+NL+ + ++ ++++V IDDIL +S
Sbjct: 696 FMNLMNKVFMEYLDKFVVVFIDDILIYSQS 725
>03_02_1026 +
13313672-13313876,13341211-13342005,13363815-13363855,
13363967-13364140
Length = 404
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKS 252
F+NL+ + ++ ++++V IDDIL +S
Sbjct: 278 FMNLMNKVFMEYLDKFVVVFIDDILVYSQS 307
>11_01_0176 -
1403284-1403553,1404313-1404468,1404569-1404787,
1405198-1405440,1405539-1405695,1406186-1406226
Length = 361
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 10 RASEIRQTQINWQSYLQGQMITQRDHDFIVNLDQRGQKDL 129
R S+ R+TQ N+Q +GQ+ QR ++N Q KD+
Sbjct: 30 RISKRRRTQHNFQKISRGQLNLQRTRPCLLNF-QSLPKDI 68
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 163 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 255
F+NL+ + ++ +++ V IDDIL +++
Sbjct: 887 FMNLMNKVFMEYLDKFVAVFIDDILIYSRTK 917
>12_01_0177 -
1312229-1312498,1314758-1315630,1315729-1315885,
1316207-1316247
Length = 446
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 10 RASEIRQTQINWQSYLQGQMITQRDHDFIVN 102
R S+ R+TQ N+Q +GQ+ QR ++N
Sbjct: 30 RISKRRRTQHNFQKISRGQLNLQRTRPCLLN 60
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 205 QYILVLIDDILSEDKSRVKIFR 270
+Y++ L++ +L +DK ++KI R
Sbjct: 792 KYVISLVEQLLLKDKDQIKIVR 813
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,709,883
Number of Sequences: 37544
Number of extensions: 137412
Number of successful extensions: 291
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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